Results 41 - 60 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11653 | 5' | -49.6 | NC_003102.1 | + | 34425 | 0.68 | 0.990034 |
Target: 5'- -gACGCGUGCA--GAACGAUAacgaGAUCa -3' miRNA: 3'- agUGCGCAUGUggCUUGCUGUg---UUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 130138 | 0.68 | 0.983474 |
Target: 5'- gUCAUGCGgcgGCGCCGAAgaaGACAaauuguacaAGUCu -3' miRNA: 3'- -AGUGCGCa--UGUGGCUUg--CUGUg--------UUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 21333 | 0.68 | 0.985357 |
Target: 5'- -uGCGCGUACGCCu-GCGGCguguccGCGGUUu -3' miRNA: 3'- agUGCGCAUGUGGcuUGCUG------UGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 32958 | 0.68 | 0.985357 |
Target: 5'- -aGCGcCGUaACGCCGAuauaguACGGCACuuUCa -3' miRNA: 3'- agUGC-GCA-UGUGGCU------UGCUGUGuuAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 63010 | 0.68 | 0.987072 |
Target: 5'- gUCGCGCGUggccaaaacgACgGCCGAAUaGGCGCGuUCg -3' miRNA: 3'- -AGUGCGCA----------UG-UGGCUUG-CUGUGUuAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 33246 | 0.68 | 0.988627 |
Target: 5'- -aAUGCGUGCACgauGAUGACACAAa- -3' miRNA: 3'- agUGCGCAUGUGgc-UUGCUGUGUUag -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 117237 | 0.68 | 0.988627 |
Target: 5'- aCACGCGcGCGCCGcgggcuuUGACGCAc-- -3' miRNA: 3'- aGUGCGCaUGUGGCuu-----GCUGUGUuag -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 65523 | 0.68 | 0.990034 |
Target: 5'- -aACGUGUAC-UUGAacaaaaaucGCGACGCGGUCa -3' miRNA: 3'- agUGCGCAUGuGGCU---------UGCUGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 41130 | 0.68 | 0.987072 |
Target: 5'- gCACGUuUACuaaaugaCGGAUGGCGCGAUCg -3' miRNA: 3'- aGUGCGcAUGug-----GCUUGCUGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 6875 | 0.69 | 0.974075 |
Target: 5'- -aGCGCcaACACCGGcggcaGCGGCACcAUCg -3' miRNA: 3'- agUGCGcaUGUGGCU-----UGCUGUGuUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 40921 | 0.69 | 0.981413 |
Target: 5'- ---aGCGUACGCCGccuCGGCAUuuguGUCg -3' miRNA: 3'- agugCGCAUGUGGCuu-GCUGUGu---UAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 42331 | 0.69 | 0.974075 |
Target: 5'- aUCACGgGcACACCcGGCG-UACAAUCg -3' miRNA: 3'- -AGUGCgCaUGUGGcUUGCuGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 114367 | 0.69 | 0.981413 |
Target: 5'- aUCGCGCGacuacaagAUAUCGGuuagaGACGCGAUCg -3' miRNA: 3'- -AGUGCGCa-------UGUGGCUug---CUGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 43469 | 0.7 | 0.953492 |
Target: 5'- uUCugGaCGUACACCu--CGGCACGAg- -3' miRNA: 3'- -AGugC-GCAUGUGGcuuGCUGUGUUag -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 27772 | 0.7 | 0.961293 |
Target: 5'- aUACGCucACGCCGGACGugAuCGAUUg -3' miRNA: 3'- aGUGCGcaUGUGGCUUGCugU-GUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 65574 | 0.71 | 0.944695 |
Target: 5'- cCACGCuucgGUACauGCCGggUaugGGCGCAAUCa -3' miRNA: 3'- aGUGCG----CAUG--UGGCuuG---CUGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 69579 | 0.71 | 0.934874 |
Target: 5'- -aACGUGUACAUUGAACGGCAa---- -3' miRNA: 3'- agUGCGCAUGUGGCUUGCUGUguuag -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 123598 | 0.71 | 0.939914 |
Target: 5'- gCGCGCGcACACCGcGAUGAauuaCACAGUUg -3' miRNA: 3'- aGUGCGCaUGUGGC-UUGCU----GUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 40506 | 0.71 | 0.944695 |
Target: 5'- -aACGCGaucaccaugaUGcCGCCGAACGGCGCGuUCg -3' miRNA: 3'- agUGCGC----------AU-GUGGCUUGCUGUGUuAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 73937 | 0.72 | 0.912111 |
Target: 5'- aUCACGCGUG-ACCGuucacGACGACACcGUg -3' miRNA: 3'- -AGUGCGCAUgUGGC-----UUGCUGUGuUAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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