Results 41 - 60 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11653 | 5' | -49.6 | NC_003102.1 | + | 34425 | 0.68 | 0.990034 |
Target: 5'- -gACGCGUGCA--GAACGAUAacgaGAUCa -3' miRNA: 3'- agUGCGCAUGUggCUUGCUGUg---UUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 128736 | 0.68 | 0.990034 |
Target: 5'- -aGCGCGcucaacGCGCUGAACGACAUuuugguUCg -3' miRNA: 3'- agUGCGCa-----UGUGGCUUGCUGUGuu----AG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 14822 | 0.68 | 0.987072 |
Target: 5'- uUUAC-CGUaaaGCACCGGACGAuCGCAcgCc -3' miRNA: 3'- -AGUGcGCA---UGUGGCUUGCU-GUGUuaG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 121267 | 0.68 | 0.987072 |
Target: 5'- gCACgGCGUcguCGCCGAcaucaacgaGCGAC-CGAUCa -3' miRNA: 3'- aGUG-CGCAu--GUGGCU---------UGCUGuGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 6875 | 0.69 | 0.974075 |
Target: 5'- -aGCGCcaACACCGGcggcaGCGGCACcAUCg -3' miRNA: 3'- agUGCGcaUGUGGCU-----UGCUGUGuUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 43469 | 0.7 | 0.953492 |
Target: 5'- uUCugGaCGUACACCu--CGGCACGAg- -3' miRNA: 3'- -AGugC-GCAUGUGGcuuGCUGUGUUag -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 40506 | 0.71 | 0.944695 |
Target: 5'- -aACGCGaucaccaugaUGcCGCCGAACGGCGCGuUCg -3' miRNA: 3'- agUGCGC----------AU-GUGGCUUGCUGUGUuAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 19357 | 0.67 | 0.992436 |
Target: 5'- gUCGCcGgGUACACaagCGucguccucAACGACGCGAUCa -3' miRNA: 3'- -AGUG-CgCAUGUG---GC--------UUGCUGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 120122 | 0.67 | 0.99345 |
Target: 5'- aCACGC----AUCGAGCGAUACAAUg -3' miRNA: 3'- aGUGCGcaugUGGCUUGCUGUGUUAg -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 95770 | 0.66 | 0.997893 |
Target: 5'- gCACGCGccACugUGGGCGAU--GAUCa -3' miRNA: 3'- aGUGCGCa-UGugGCUUGCUGugUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 135352 | 0.66 | 0.997893 |
Target: 5'- -aAUGCGUACACUuuGAAUGcCACGAc- -3' miRNA: 3'- agUGCGCAUGUGG--CUUGCuGUGUUag -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 77297 | 0.66 | 0.997443 |
Target: 5'- aUCACGUgcccaGUAUGCagacagacgacgaCGAGCGuCACAAUCg -3' miRNA: 3'- -AGUGCG-----CAUGUG-------------GCUUGCuGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 139098 | 0.66 | 0.996476 |
Target: 5'- aUCACGUacGCACCGAG-GGCAUuAUCu -3' miRNA: 3'- -AGUGCGcaUGUGGCUUgCUGUGuUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 90319 | 0.66 | 0.995857 |
Target: 5'- -gACGCG-GCGCCGAACaAgACGAUg -3' miRNA: 3'- agUGCGCaUGUGGCUUGcUgUGUUAg -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 85708 | 0.66 | 0.995857 |
Target: 5'- -aGCGCGUACACaaacgCGAuuaGACACAc-- -3' miRNA: 3'- agUGCGCAUGUG-----GCUug-CUGUGUuag -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 76384 | 0.66 | 0.995655 |
Target: 5'- gUCGCGUugaaaaucuucaauGUACGuuaugauuguguCCGGauugGCGACACAAUCu -3' miRNA: 3'- -AGUGCG--------------CAUGU------------GGCU----UGCUGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 63666 | 0.67 | 0.995152 |
Target: 5'- uUCGCGCcuaGUcccgaacagcaACgACCGcaGACGACGCGAUCc -3' miRNA: 3'- -AGUGCG---CA-----------UG-UGGC--UUGCUGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 102288 | 0.67 | 0.995077 |
Target: 5'- aUCGCGC-UGCuGCCGAAUucgacgacgaaaaGACACGAUa -3' miRNA: 3'- -AGUGCGcAUG-UGGCUUG-------------CUGUGUUAg -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 106174 | 0.67 | 0.994353 |
Target: 5'- -aACGUGUAUuucguguagccuACCGAACauuCGCAAUCg -3' miRNA: 3'- agUGCGCAUG------------UGGCUUGcu-GUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 100770 | 0.67 | 0.99345 |
Target: 5'- -aACGCGUugGCUGAGaauaGA-GCGAUCg -3' miRNA: 3'- agUGCGCAugUGGCUUg---CUgUGUUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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