Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11653 | 5' | -49.6 | NC_003102.1 | + | 128206 | 0.75 | 0.782918 |
Target: 5'- gCACGUGUACgaAUCGGggucuaaaaACGGCACGAUCa -3' miRNA: 3'- aGUGCGCAUG--UGGCU---------UGCUGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 73937 | 0.72 | 0.912111 |
Target: 5'- aUCACGCGUG-ACCGuucacGACGACACcGUg -3' miRNA: 3'- -AGUGCGCAUgUGGC-----UUGCUGUGuUAg -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 96979 | 0.72 | 0.924014 |
Target: 5'- cCACGCGUACAUCGGA-GACAg---- -3' miRNA: 3'- aGUGCGCAUGUGGCUUgCUGUguuag -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 123598 | 0.71 | 0.939914 |
Target: 5'- gCGCGCGcACACCGcGAUGAauuaCACAGUUg -3' miRNA: 3'- aGUGCGCaUGUGGC-UUGCU----GUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 27772 | 0.7 | 0.961293 |
Target: 5'- aUACGCucACGCCGGACGugAuCGAUUg -3' miRNA: 3'- aGUGCGcaUGUGGCUUGCugU-GUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 42331 | 0.69 | 0.974075 |
Target: 5'- aUCACGgGcACACCcGGCG-UACAAUCg -3' miRNA: 3'- -AGUGCgCaUGUGGcUUGCuGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 40921 | 0.69 | 0.981413 |
Target: 5'- ---aGCGUACGCCGccuCGGCAUuuguGUCg -3' miRNA: 3'- agugCGCAUGUGGCuu-GCUGUGu---UAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 114367 | 0.69 | 0.981413 |
Target: 5'- aUCGCGCGacuacaagAUAUCGGuuagaGACGCGAUCg -3' miRNA: 3'- -AGUGCGCa-------UGUGGCUug---CUGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 63010 | 0.68 | 0.987072 |
Target: 5'- gUCGCGCGUggccaaaacgACgGCCGAAUaGGCGCGuUCg -3' miRNA: 3'- -AGUGCGCA----------UG-UGGCUUG-CUGUGUuAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 41130 | 0.68 | 0.987072 |
Target: 5'- gCACGUuUACuaaaugaCGGAUGGCGCGAUCg -3' miRNA: 3'- aGUGCGcAUGug-----GCUUGCUGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 32958 | 0.68 | 0.985357 |
Target: 5'- -aGCGcCGUaACGCCGAuauaguACGGCACuuUCa -3' miRNA: 3'- agUGC-GCA-UGUGGCU------UGCUGUGuuAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 21333 | 0.68 | 0.985357 |
Target: 5'- -uGCGCGUACGCCu-GCGGCguguccGCGGUUu -3' miRNA: 3'- agUGCGCAUGUGGcuUGCUG------UGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 130138 | 0.68 | 0.983474 |
Target: 5'- gUCAUGCGgcgGCGCCGAAgaaGACAaauuguacaAGUCu -3' miRNA: 3'- -AGUGCGCa--UGUGGCUUg--CUGUg--------UUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 100770 | 0.68 | 0.983474 |
Target: 5'- cUACGgGaggACGCgUGAugGGCGCGAUCa -3' miRNA: 3'- aGUGCgCa--UGUG-GCUugCUGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 15699 | 0.68 | 0.983474 |
Target: 5'- aCGuCGCG-ACGCCGA-CGagucGCGCGAUCg -3' miRNA: 3'- aGU-GCGCaUGUGGCUuGC----UGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 20090 | 1.12 | 0.007679 |
Target: 5'- uUCACGCGUACACCGAACGACACAAUCg -3' miRNA: 3'- -AGUGCGCAUGUGGCUUGCUGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 95770 | 0.66 | 0.997893 |
Target: 5'- gCACGCGccACugUGGGCGAU--GAUCa -3' miRNA: 3'- aGUGCGCa-UGugGCUUGCUGugUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 135352 | 0.66 | 0.997893 |
Target: 5'- -aAUGCGUACACUuuGAAUGcCACGAc- -3' miRNA: 3'- agUGCGCAUGUGG--CUUGCuGUGUUag -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 77297 | 0.66 | 0.997443 |
Target: 5'- aUCACGUgcccaGUAUGCagacagacgacgaCGAGCGuCACAAUCg -3' miRNA: 3'- -AGUGCG-----CAUGUG-------------GCUUGCuGUGUUAG- -5' |
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11653 | 5' | -49.6 | NC_003102.1 | + | 139098 | 0.66 | 0.996476 |
Target: 5'- aUCACGUacGCACCGAG-GGCAUuAUCu -3' miRNA: 3'- -AGUGCGcaUGUGGCUUgCUGUGuUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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