miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11653 5' -49.6 NC_003102.1 + 41401 0.66 0.997893
Target:  5'- aUCGCGCaucaGCGCCGAauACGuuuCGCcGUCa -3'
miRNA:   3'- -AGUGCGca--UGUGGCU--UGCu--GUGuUAG- -5'
11653 5' -49.6 NC_003102.1 + 42056 0.67 0.992436
Target:  5'- cCGCGCu--CACCGAacagccgucgGCGucGCACAAUCu -3'
miRNA:   3'- aGUGCGcauGUGGCU----------UGC--UGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 42331 0.69 0.974075
Target:  5'- aUCACGgGcACACCcGGCG-UACAAUCg -3'
miRNA:   3'- -AGUGCgCaUGUGGcUUGCuGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 43469 0.7 0.953492
Target:  5'- uUCugGaCGUACACCu--CGGCACGAg- -3'
miRNA:   3'- -AGugC-GCAUGUGGcuuGCUGUGUUag -5'
11653 5' -49.6 NC_003102.1 + 47030 0.66 0.997893
Target:  5'- uUCAC-CGUGC-CCGAuacaGACGCGuccGUCg -3'
miRNA:   3'- -AGUGcGCAUGuGGCUug--CUGUGU---UAG- -5'
11653 5' -49.6 NC_003102.1 + 52521 0.67 0.992436
Target:  5'- gCACGCGUagACACgGAuuACGAgCGUAAUCa -3'
miRNA:   3'- aGUGCGCA--UGUGgCU--UGCU-GUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 52667 0.66 0.996476
Target:  5'- aCACGCGUACAUgcacaCGcACGcACACAc-- -3'
miRNA:   3'- aGUGCGCAUGUG-----GCuUGC-UGUGUuag -5'
11653 5' -49.6 NC_003102.1 + 59418 0.73 0.892328
Target:  5'- --uUGUGUGCGCCGA-CGGCGCuuUCg -3'
miRNA:   3'- aguGCGCAUGUGGCUuGCUGUGuuAG- -5'
11653 5' -49.6 NC_003102.1 + 63010 0.68 0.987072
Target:  5'- gUCGCGCGUggccaaaacgACgGCCGAAUaGGCGCGuUCg -3'
miRNA:   3'- -AGUGCGCA----------UG-UGGCUUG-CUGUGUuAG- -5'
11653 5' -49.6 NC_003102.1 + 63067 0.66 0.997017
Target:  5'- -gACGCGagACACgaucuCGGcgGCGGCACGGUCc -3'
miRNA:   3'- agUGCGCa-UGUG-----GCU--UGCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 63666 0.67 0.995152
Target:  5'- uUCGCGCcuaGUcccgaacagcaACgACCGcaGACGACGCGAUCc -3'
miRNA:   3'- -AGUGCG---CA-----------UG-UGGC--UUGCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 65523 0.68 0.990034
Target:  5'- -aACGUGUAC-UUGAacaaaaaucGCGACGCGGUCa -3'
miRNA:   3'- agUGCGCAUGuGGCU---------UGCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 65574 0.71 0.944695
Target:  5'- cCACGCuucgGUACauGCCGggUaugGGCGCAAUCa -3'
miRNA:   3'- aGUGCG----CAUG--UGGCuuG---CUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 69579 0.71 0.934874
Target:  5'- -aACGUGUACAUUGAACGGCAa---- -3'
miRNA:   3'- agUGCGCAUGUGGCUUGCUGUguuag -5'
11653 5' -49.6 NC_003102.1 + 73937 0.72 0.912111
Target:  5'- aUCACGCGUG-ACCGuucacGACGACACcGUg -3'
miRNA:   3'- -AGUGCGCAUgUGGC-----UUGCUGUGuUAg -5'
11653 5' -49.6 NC_003102.1 + 76384 0.66 0.995655
Target:  5'- gUCGCGUugaaaaucuucaauGUACGuuaugauuguguCCGGauugGCGACACAAUCu -3'
miRNA:   3'- -AGUGCG--------------CAUGU------------GGCU----UGCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 77297 0.66 0.997443
Target:  5'- aUCACGUgcccaGUAUGCagacagacgacgaCGAGCGuCACAAUCg -3'
miRNA:   3'- -AGUGCG-----CAUGUG-------------GCUUGCuGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 85708 0.66 0.995857
Target:  5'- -aGCGCGUACACaaacgCGAuuaGACACAc-- -3'
miRNA:   3'- agUGCGCAUGUG-----GCUug-CUGUGUuag -5'
11653 5' -49.6 NC_003102.1 + 90319 0.66 0.995857
Target:  5'- -gACGCG-GCGCCGAACaAgACGAUg -3'
miRNA:   3'- agUGCGCaUGUGGCUUGcUgUGUUAg -5'
11653 5' -49.6 NC_003102.1 + 95062 0.66 0.99804
Target:  5'- aCAUGCGgcgccUACGCCcuuguugauguguucGGcCGACACGAUCu -3'
miRNA:   3'- aGUGCGC-----AUGUGG---------------CUuGCUGUGUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.