miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11653 5' -49.6 NC_003102.1 + 32958 0.68 0.985357
Target:  5'- -aGCGcCGUaACGCCGAuauaguACGGCACuuUCa -3'
miRNA:   3'- agUGC-GCA-UGUGGCU------UGCUGUGuuAG- -5'
11653 5' -49.6 NC_003102.1 + 121267 0.68 0.987072
Target:  5'- gCACgGCGUcguCGCCGAcaucaacgaGCGAC-CGAUCa -3'
miRNA:   3'- aGUG-CGCAu--GUGGCU---------UGCUGuGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 14822 0.68 0.987072
Target:  5'- uUUAC-CGUaaaGCACCGGACGAuCGCAcgCc -3'
miRNA:   3'- -AGUGcGCA---UGUGGCUUGCU-GUGUuaG- -5'
11653 5' -49.6 NC_003102.1 + 63010 0.68 0.987072
Target:  5'- gUCGCGCGUggccaaaacgACgGCCGAAUaGGCGCGuUCg -3'
miRNA:   3'- -AGUGCGCA----------UG-UGGCUUG-CUGUGUuAG- -5'
11653 5' -49.6 NC_003102.1 + 41130 0.68 0.987072
Target:  5'- gCACGUuUACuaaaugaCGGAUGGCGCGAUCg -3'
miRNA:   3'- aGUGCGcAUGug-----GCUUGCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 117237 0.68 0.988627
Target:  5'- aCACGCGcGCGCCGcgggcuuUGACGCAc-- -3'
miRNA:   3'- aGUGCGCaUGUGGCuu-----GCUGUGUuag -5'
11653 5' -49.6 NC_003102.1 + 33246 0.68 0.988627
Target:  5'- -aAUGCGUGCACgauGAUGACACAAa- -3'
miRNA:   3'- agUGCGCAUGUGgc-UUGCUGUGUUag -5'
11653 5' -49.6 NC_003102.1 + 34425 0.68 0.990034
Target:  5'- -gACGCGUGCA--GAACGAUAacgaGAUCa -3'
miRNA:   3'- agUGCGCAUGUggCUUGCUGUg---UUAG- -5'
11653 5' -49.6 NC_003102.1 + 65523 0.68 0.990034
Target:  5'- -aACGUGUAC-UUGAacaaaaaucGCGACGCGGUCa -3'
miRNA:   3'- agUGCGCAUGuGGCU---------UGCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 128736 0.68 0.990034
Target:  5'- -aGCGCGcucaacGCGCUGAACGACAUuuugguUCg -3'
miRNA:   3'- agUGCGCa-----UGUGGCUUGCUGUGuu----AG- -5'
11653 5' -49.6 NC_003102.1 + 117716 0.67 0.990934
Target:  5'- -aACGUcaaGUACaaaACCGAaacgcuuucauugcGCGACGCGAUCa -3'
miRNA:   3'- agUGCG---CAUG---UGGCU--------------UGCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 95195 0.67 0.9913
Target:  5'- cUugGUGcACGCCGA-CGACGC-GUCu -3'
miRNA:   3'- aGugCGCaUGUGGCUuGCUGUGuUAG- -5'
11653 5' -49.6 NC_003102.1 + 131583 0.67 0.9913
Target:  5'- cCACGgGUACGCCcaauuGACGAUcgaacaguACAAUCc -3'
miRNA:   3'- aGUGCgCAUGUGGc----UUGCUG--------UGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 19357 0.67 0.992436
Target:  5'- gUCGCcGgGUACACaagCGucguccucAACGACGCGAUCa -3'
miRNA:   3'- -AGUG-CgCAUGUG---GC--------UUGCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 30871 0.67 0.992436
Target:  5'- -gACGCGUuCGCCGAGCuAgGCAAg- -3'
miRNA:   3'- agUGCGCAuGUGGCUUGcUgUGUUag -5'
11653 5' -49.6 NC_003102.1 + 42056 0.67 0.992436
Target:  5'- cCGCGCu--CACCGAacagccgucgGCGucGCACAAUCu -3'
miRNA:   3'- aGUGCGcauGUGGCU----------UGC--UGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 52521 0.67 0.992436
Target:  5'- gCACGCGUagACACgGAuuACGAgCGUAAUCa -3'
miRNA:   3'- aGUGCGCA--UGUGgCU--UGCU-GUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 113223 0.67 0.992436
Target:  5'- gCACGCGUucuugaAUCGAugGAUGCuGUCc -3'
miRNA:   3'- aGUGCGCAug----UGGCUugCUGUGuUAG- -5'
11653 5' -49.6 NC_003102.1 + 100770 0.67 0.99345
Target:  5'- -aACGCGUugGCUGAGaauaGA-GCGAUCg -3'
miRNA:   3'- agUGCGCAugUGGCUUg---CUgUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 120122 0.67 0.99345
Target:  5'- aCACGC----AUCGAGCGAUACAAUg -3'
miRNA:   3'- aGUGCGcaugUGGCUUGCUGUGUUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.