miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11653 5' -49.6 NC_003102.1 + 76384 0.66 0.995655
Target:  5'- gUCGCGUugaaaaucuucaauGUACGuuaugauuguguCCGGauugGCGACACAAUCu -3'
miRNA:   3'- -AGUGCG--------------CAUGU------------GGCU----UGCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 636 0.67 0.995152
Target:  5'- gUACGUGgGCACCGAcuCGGCugAAg- -3'
miRNA:   3'- aGUGCGCaUGUGGCUu-GCUGugUUag -5'
11653 5' -49.6 NC_003102.1 + 63666 0.67 0.995152
Target:  5'- uUCGCGCcuaGUcccgaacagcaACgACCGcaGACGACGCGAUCc -3'
miRNA:   3'- -AGUGCG---CA-----------UG-UGGC--UUGCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 102288 0.67 0.995077
Target:  5'- aUCGCGC-UGCuGCCGAAUucgacgacgaaaaGACACGAUa -3'
miRNA:   3'- -AGUGCGcAUG-UGGCUUG-------------CUGUGUUAg -5'
11653 5' -49.6 NC_003102.1 + 106174 0.67 0.994353
Target:  5'- -aACGUGUAUuucguguagccuACCGAACauuCGCAAUCg -3'
miRNA:   3'- agUGCGCAUG------------UGGCUUGcu-GUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 120122 0.67 0.99345
Target:  5'- aCACGC----AUCGAGCGAUACAAUg -3'
miRNA:   3'- aGUGCGcaugUGGCUUGCUGUGUUAg -5'
11653 5' -49.6 NC_003102.1 + 100770 0.67 0.99345
Target:  5'- -aACGCGUugGCUGAGaauaGA-GCGAUCg -3'
miRNA:   3'- agUGCGCAugUGGCUUg---CUgUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 30871 0.67 0.992436
Target:  5'- -gACGCGUuCGCCGAGCuAgGCAAg- -3'
miRNA:   3'- agUGCGCAuGUGGCUUGcUgUGUUag -5'
11653 5' -49.6 NC_003102.1 + 19357 0.67 0.992436
Target:  5'- gUCGCcGgGUACACaagCGucguccucAACGACGCGAUCa -3'
miRNA:   3'- -AGUG-CgCAUGUG---GC--------UUGCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 52521 0.67 0.992436
Target:  5'- gCACGCGUagACACgGAuuACGAgCGUAAUCa -3'
miRNA:   3'- aGUGCGCA--UGUGgCU--UGCU-GUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 113223 0.67 0.992436
Target:  5'- gCACGCGUucuugaAUCGAugGAUGCuGUCc -3'
miRNA:   3'- aGUGCGCAug----UGGCUugCUGUGuUAG- -5'
11653 5' -49.6 NC_003102.1 + 42056 0.67 0.992436
Target:  5'- cCGCGCu--CACCGAacagccgucgGCGucGCACAAUCu -3'
miRNA:   3'- aGUGCGcauGUGGCU----------UGC--UGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 95195 0.67 0.9913
Target:  5'- cUugGUGcACGCCGA-CGACGC-GUCu -3'
miRNA:   3'- aGugCGCaUGUGGCUuGCUGUGuUAG- -5'
11653 5' -49.6 NC_003102.1 + 131583 0.67 0.9913
Target:  5'- cCACGgGUACGCCcaauuGACGAUcgaacaguACAAUCc -3'
miRNA:   3'- aGUGCgCAUGUGGc----UUGCUG--------UGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 117716 0.67 0.990934
Target:  5'- -aACGUcaaGUACaaaACCGAaacgcuuucauugcGCGACGCGAUCa -3'
miRNA:   3'- agUGCG---CAUG---UGGCU--------------UGCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 34425 0.68 0.990034
Target:  5'- -gACGCGUGCA--GAACGAUAacgaGAUCa -3'
miRNA:   3'- agUGCGCAUGUggCUUGCUGUg---UUAG- -5'
11653 5' -49.6 NC_003102.1 + 65523 0.68 0.990034
Target:  5'- -aACGUGUAC-UUGAacaaaaaucGCGACGCGGUCa -3'
miRNA:   3'- agUGCGCAUGuGGCU---------UGCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 128736 0.68 0.990034
Target:  5'- -aGCGCGcucaacGCGCUGAACGACAUuuugguUCg -3'
miRNA:   3'- agUGCGCa-----UGUGGCUUGCUGUGuu----AG- -5'
11653 5' -49.6 NC_003102.1 + 33246 0.68 0.988627
Target:  5'- -aAUGCGUGCACgauGAUGACACAAa- -3'
miRNA:   3'- agUGCGCAUGUGgc-UUGCUGUGUUag -5'
11653 5' -49.6 NC_003102.1 + 117237 0.68 0.988627
Target:  5'- aCACGCGcGCGCCGcgggcuuUGACGCAc-- -3'
miRNA:   3'- aGUGCGCaUGUGGCuu-----GCUGUGUuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.