miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11653 5' -49.6 NC_003102.1 + 69579 0.71 0.934874
Target:  5'- -aACGUGUACAUUGAACGGCAa---- -3'
miRNA:   3'- agUGCGCAUGUGGCUUGCUGUguuag -5'
11653 5' -49.6 NC_003102.1 + 34425 0.68 0.990034
Target:  5'- -gACGCGUGCA--GAACGAUAacgaGAUCa -3'
miRNA:   3'- agUGCGCAUGUggCUUGCUGUg---UUAG- -5'
11653 5' -49.6 NC_003102.1 + 63666 0.67 0.995152
Target:  5'- uUCGCGCcuaGUcccgaacagcaACgACCGcaGACGACGCGAUCc -3'
miRNA:   3'- -AGUGCG---CA-----------UG-UGGC--UUGCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 6875 0.69 0.974075
Target:  5'- -aGCGCcaACACCGGcggcaGCGGCACcAUCg -3'
miRNA:   3'- agUGCGcaUGUGGCU-----UGCUGUGuUAG- -5'
11653 5' -49.6 NC_003102.1 + 59418 0.73 0.892328
Target:  5'- --uUGUGUGCGCCGA-CGGCGCuuUCg -3'
miRNA:   3'- aguGCGCAUGUGGCUuGCUGUGuuAG- -5'
11653 5' -49.6 NC_003102.1 + 65574 0.71 0.944695
Target:  5'- cCACGCuucgGUACauGCCGggUaugGGCGCAAUCa -3'
miRNA:   3'- aGUGCG----CAUG--UGGCuuG---CUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 76384 0.66 0.995655
Target:  5'- gUCGCGUugaaaaucuucaauGUACGuuaugauuguguCCGGauugGCGACACAAUCu -3'
miRNA:   3'- -AGUGCG--------------CAUGU------------GGCU----UGCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 85708 0.66 0.995857
Target:  5'- -aGCGCGUACACaaacgCGAuuaGACACAc-- -3'
miRNA:   3'- agUGCGCAUGUG-----GCUug-CUGUGUuag -5'
11653 5' -49.6 NC_003102.1 + 106174 0.67 0.994353
Target:  5'- -aACGUGUAUuucguguagccuACCGAACauuCGCAAUCg -3'
miRNA:   3'- agUGCGCAUG------------UGGCUUGcu-GUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 128736 0.68 0.990034
Target:  5'- -aGCGCGcucaacGCGCUGAACGACAUuuugguUCg -3'
miRNA:   3'- agUGCGCa-----UGUGGCUUGCUGUGuu----AG- -5'
11653 5' -49.6 NC_003102.1 + 42331 0.69 0.974075
Target:  5'- aUCACGgGcACACCcGGCG-UACAAUCg -3'
miRNA:   3'- -AGUGCgCaUGUGGcUUGCuGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 131646 0.66 0.997017
Target:  5'- -gGCGUGUGCGacuguggcgauCCGGACGAgACcagAGUCg -3'
miRNA:   3'- agUGCGCAUGU-----------GGCUUGCUgUG---UUAG- -5'
11653 5' -49.6 NC_003102.1 + 41130 0.68 0.987072
Target:  5'- gCACGUuUACuaaaugaCGGAUGGCGCGAUCg -3'
miRNA:   3'- aGUGCGcAUGug-----GCUUGCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 32958 0.68 0.985357
Target:  5'- -aGCGcCGUaACGCCGAuauaguACGGCACuuUCa -3'
miRNA:   3'- agUGC-GCA-UGUGGCU------UGCUGUGuuAG- -5'
11653 5' -49.6 NC_003102.1 + 21333 0.68 0.985357
Target:  5'- -uGCGCGUACGCCu-GCGGCguguccGCGGUUu -3'
miRNA:   3'- agUGCGCAUGUGGcuUGCUG------UGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 18040 0.66 0.996476
Target:  5'- gUCGgGCGUGCuaUGAACGGgACGAUUc -3'
miRNA:   3'- -AGUgCGCAUGugGCUUGCUgUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 19960 0.66 0.996476
Target:  5'- -gGCGUGUACAUggCGcuCGACGCGAg- -3'
miRNA:   3'- agUGCGCAUGUG--GCuuGCUGUGUUag -5'
11653 5' -49.6 NC_003102.1 + 25079 0.66 0.996476
Target:  5'- -aACGCaGUACAUgGAacACGACAUAAa- -3'
miRNA:   3'- agUGCG-CAUGUGgCU--UGCUGUGUUag -5'
11653 5' -49.6 NC_003102.1 + 52667 0.66 0.996476
Target:  5'- aCACGCGUACAUgcacaCGcACGcACACAc-- -3'
miRNA:   3'- aGUGCGCAUGUG-----GCuUGC-UGUGUuag -5'
11653 5' -49.6 NC_003102.1 + 100550 0.66 0.996966
Target:  5'- gCGCGCGUcaauaucgaagcGCACucuagacggcuaaCGGACGACGCGuccggAUCg -3'
miRNA:   3'- aGUGCGCA------------UGUG-------------GCUUGCUGUGU-----UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.