miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11654 3' -48.7 NC_003102.1 + 56050 0.69 0.98186
Target:  5'- aAACaUGUUUACGAAAAGUCaGaCACGu -3'
miRNA:   3'- -UUGgACAAAUGCUUUUCAGcCgGUGC- -5'
11654 3' -48.7 NC_003102.1 + 56170 0.69 0.985796
Target:  5'- uACaUGUUUAUGAuuuauuuugaAAAGUCGGCCAgGu -3'
miRNA:   3'- uUGgACAAAUGCU----------UUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 61548 0.72 0.923604
Target:  5'- uGAUauaUGUUUACaAAAAGUCGGCCAgGu -3'
miRNA:   3'- -UUGg--ACAAAUGcUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 62753 0.72 0.934696
Target:  5'- aAACCUGcaagccUACGAAcAGUUGGUCGCGc -3'
miRNA:   3'- -UUGGACaa----AUGCUUuUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 66947 0.71 0.949316
Target:  5'- --aUUGUgaUAUGAAAAGUCGGCCAgGu -3'
miRNA:   3'- uugGACAa-AUGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 67140 0.69 0.98186
Target:  5'- cGAUCgcuuauCGAAAAGUCGGCCAgGu -3'
miRNA:   3'- -UUGGacaaauGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 67231 0.77 0.748706
Target:  5'- uGACUUa-UUACGAAAAGUCGGCCAgGu -3'
miRNA:   3'- -UUGGAcaAAUGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 76449 0.85 0.344664
Target:  5'- ----aGUUUAUGAAAAGUCGGCCACGu -3'
miRNA:   3'- uuggaCAAAUGCUUUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 76513 0.74 0.852333
Target:  5'- -----aUUUACGAAAAGUCGGCCAgGu -3'
miRNA:   3'- uuggacAAAUGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 76637 0.68 0.989042
Target:  5'- --------aACGAAAAGUCGGCCAgGu -3'
miRNA:   3'- uuggacaaaUGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 89312 0.73 0.904941
Target:  5'- uACaUGUUUaaccACGAAAAGUCGGCCGgGu -3'
miRNA:   3'- uUGgACAAA----UGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 89602 0.75 0.826266
Target:  5'- ----aGUUUACGAAAAGUCGGaCACGu -3'
miRNA:   3'- uuggaCAAAUGCUUUUCAGCCgGUGC- -5'
11654 3' -48.7 NC_003102.1 + 89676 0.7 0.971614
Target:  5'- cACCaGauucUACGAAAAGUCaGCCACGu -3'
miRNA:   3'- uUGGaCaa--AUGCUUUUCAGcCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 97677 0.81 0.534195
Target:  5'- ----cGUUcACGAAAAGUCGGCCACGu -3'
miRNA:   3'- uuggaCAAaUGCUUUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 97727 0.83 0.433463
Target:  5'- aGACagGUUugUACGAAAAGUCGGCCACGu -3'
miRNA:   3'- -UUGgaCAA--AUGCUUUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 97784 0.71 0.94471
Target:  5'- aGACggGUUugUACGAAAAGU-GGCCACGu -3'
miRNA:   3'- -UUGgaCAA--AUGCUUUUCAgCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 97840 0.85 0.344664
Target:  5'- aGACggGUUugUACGAAAAGUCGGCCACGu -3'
miRNA:   3'- -UUGgaCAA--AUGCUUUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 103622 0.72 0.929286
Target:  5'- cGACaUGUUcACGAAAAGUCGGaCGCGu -3'
miRNA:   3'- -UUGgACAAaUGCUUUUCAGCCgGUGC- -5'
11654 3' -48.7 NC_003102.1 + 103646 0.71 0.949316
Target:  5'- ----cGUUUgagcACGAAAAGUCGGCCAgGu -3'
miRNA:   3'- uuggaCAAA----UGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 103820 0.68 0.990432
Target:  5'- cAAUCU----AUGAAGAGUCGGCCAgGu -3'
miRNA:   3'- -UUGGAcaaaUGCUUUUCAGCCGGUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.