miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11654 5' -50.1 NC_003102.1 + 76479 0.87 0.185721
Target:  5'- gAACCUGGCCGACUUUUCGUuGAUUg-- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCA-CUAGuua -5'
11654 5' -50.1 NC_003102.1 + 112472 0.69 0.940019
Target:  5'- gAACCUGGCUGACUUUUCa-------- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGcacuaguua -5'
11654 5' -50.1 NC_003102.1 + 104287 0.7 0.929438
Target:  5'- uAACCUGGuuGACUUUUCGauaagccAUCGAc -3'
miRNA:   3'- -UUGGACCggCUGAAAAGCac-----UAGUUa -5'
11654 5' -50.1 NC_003102.1 + 42596 0.7 0.911519
Target:  5'- gAACCUGGCCGACcgcaaacUUGUGAuauuuUCAAa -3'
miRNA:   3'- -UUGGACCGGCUGaaa----AGCACU-----AGUUa -5'
11654 5' -50.1 NC_003102.1 + 26362 0.72 0.843628
Target:  5'- gAACgUGGCCGACUUUUCGaGAaaGAUg -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGCaCUagUUA- -5'
11654 5' -50.1 NC_003102.1 + 103657 0.72 0.834891
Target:  5'- gAACCUGGCCGACUcUUCauaGAUUGAa -3'
miRNA:   3'- -UUGGACCGGCUGAaAAGca-CUAGUUa -5'
11654 5' -50.1 NC_003102.1 + 112653 0.73 0.816794
Target:  5'- gAACCUGuCUGACUUUUCGUGAaCAu- -3'
miRNA:   3'- -UUGGACcGGCUGAAAAGCACUaGUua -5'
11654 5' -50.1 NC_003102.1 + 55993 0.74 0.768378
Target:  5'- gAACCUGGCCGACUUUUCaaaauaaAUCAu- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGcac----UAGUua -5'
11654 5' -50.1 NC_003102.1 + 25836 0.74 0.758236
Target:  5'- gAACgUGGCCGACUUUUCGUaaacaGGUUAc- -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGCA-----CUAGUua -5'
11654 5' -50.1 NC_003102.1 + 104350 0.75 0.716503
Target:  5'- gAACCUGGCCGACUUUUUagaUGAcgCAAUu -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGc--ACUa-GUUA- -5'
11654 5' -50.1 NC_003102.1 + 56085 0.76 0.651652
Target:  5'- gAACCUGGCCGACUUUUUa--GUCAAa -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGcacUAGUUa -5'
11654 5' -50.1 NC_003102.1 + 36211 0.77 0.586135
Target:  5'- gAACCUGGCCGACUUUUUGUaauuuUUAAUa -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCAcu---AGUUA- -5'
11654 5' -50.1 NC_003102.1 + 61379 0.78 0.532484
Target:  5'- aAACCUGGCCGACUUUUUGUaaacauauAUCAAUc -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCAc-------UAGUUA- -5'
11654 5' -50.1 NC_003102.1 + 103539 0.79 0.5115
Target:  5'- aAACCUGGCCGACUUUUUGaccAUCGAc -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCac-UAGUUa -5'
11654 5' -50.1 NC_003102.1 + 103598 0.79 0.501137
Target:  5'- gAACCUGGCCGACUUUUUGaccAUCGAc -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCac-UAGUUa -5'
11654 5' -50.1 NC_003102.1 + 76352 0.81 0.376521
Target:  5'- gAACCUGGCCGACUUUUCGUaaauuUUAAUg -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCAcu---AGUUA- -5'
11654 5' -50.1 NC_003102.1 + 104636 0.83 0.318632
Target:  5'- gAACCUGGCCGACUUUUUGUuGAUUg-- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCA-CUAGuua -5'
11654 5' -50.1 NC_003102.1 + 112569 0.83 0.310929
Target:  5'- gAACCUGGCCGACUUUUCGUuGA-CAu- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCA-CUaGUua -5'
11654 5' -50.1 NC_003102.1 + 104516 0.83 0.303368
Target:  5'- gAACCUGGCCGACUUUUCGUugacauguuuaGAUCu-- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCA-----------CUAGuua -5'
11654 5' -50.1 NC_003102.1 + 103480 0.94 0.069985
Target:  5'- gAACCUGGCCGACUUUUCGUGcUCAAa -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCACuAGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.