Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11654 | 5' | -50.1 | NC_003102.1 | + | 130 | 0.67 | 0.979811 |
Target: 5'- cGCgaGGCCGACgag-CGUGAgcUCGAUc -3' miRNA: 3'- uUGgaCCGGCUGaaaaGCACU--AGUUA- -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 10574 | 0.92 | 0.095734 |
Target: 5'- gAACCUGGCCGACUUUUCGUGAggcCAAc -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACUa--GUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 10650 | 0.89 | 0.133929 |
Target: 5'- aAACCUGGCCGACUUUUCGUGuUUAAg -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACuAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 10732 | 0.89 | 0.149517 |
Target: 5'- gAACCUGGCCGACUUUUCGUGcugaAUCAc- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAC----UAGUua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 10815 | 0.89 | 0.13768 |
Target: 5'- uAACCUGGCCGACUUUUCGUGcUUAAg -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACuAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 25836 | 0.74 | 0.758236 |
Target: 5'- gAACgUGGCCGACUUUUCGUaaacaGGUUAc- -3' miRNA: 3'- -UUGgACCGGCUGAAAAGCA-----CUAGUua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 25968 | 1.04 | 0.01489 |
Target: 5'- gAACCUGGCCGACUUUUCGUGAUCAAUa -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACUAGUUA- -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 26048 | 1.04 | 0.015336 |
Target: 5'- aAACCUGGCCGACUUUUCGUGAUCAAUa -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACUAGUUA- -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 26107 | 0.9 | 0.126708 |
Target: 5'- gAACCUGGCCGACUUUUUGUGcUCAAa -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACuAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 26190 | 0.9 | 0.130272 |
Target: 5'- gAACCUGGCCGACUUUUCGUGcUUAAg -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACuAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 26267 | 0.9 | 0.130272 |
Target: 5'- gAACCUGGCCGACUUUUCGUGuUUAAg -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACuAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 26326 | 0.71 | 0.89822 |
Target: 5'- gAAUUUGGCCGACUUUUUGgucAUCGAc -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCac-UAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 26362 | 0.72 | 0.843628 |
Target: 5'- gAACgUGGCCGACUUUUCGaGAaaGAUg -3' miRNA: 3'- -UUGgACCGGCUGAAAAGCaCUagUUA- -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 36211 | 0.77 | 0.586135 |
Target: 5'- gAACCUGGCCGACUUUUUGUaauuuUUAAUa -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcu---AGUUA- -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 42596 | 0.7 | 0.911519 |
Target: 5'- gAACCUGGCCGACcgcaaacUUGUGAuauuuUCAAa -3' miRNA: 3'- -UUGGACCGGCUGaaa----AGCACU-----AGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 42728 | 0.67 | 0.979811 |
Target: 5'- cAACUUGuCUGACUUUUCGUGAaCAu- -3' miRNA: 3'- -UUGGACcGGCUGAAAAGCACUaGUua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 42895 | 0.86 | 0.201184 |
Target: 5'- gAACCUGGCCGACUUUUUGUGAauauguuuggUCAAc -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACU----------AGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 54314 | 0.68 | 0.965382 |
Target: 5'- cAACUUGGCCGACUUUUcaaaguauaaaCGUG-UUAAa -3' miRNA: 3'- -UUGGACCGGCUGAAAA-----------GCACuAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 54594 | 0.71 | 0.89822 |
Target: 5'- gAACCUGGCCGACUUUUUuuUGAc---- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGc-ACUaguua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 54789 | 0.68 | 0.974708 |
Target: 5'- gAACCUGGCUGACUUUUUa-GAUUu-- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGcaCUAGuua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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