Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11654 | 5' | -50.1 | NC_003102.1 | + | 55993 | 0.74 | 0.768378 |
Target: 5'- gAACCUGGCCGACUUUUCaaaauaaAUCAu- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGcac----UAGUua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 56085 | 0.76 | 0.651652 |
Target: 5'- gAACCUGGCCGACUUUUUa--GUCAAa -3' miRNA: 3'- -UUGGACCGGCUGAAAAGcacUAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 61379 | 0.78 | 0.532484 |
Target: 5'- aAACCUGGCCGACUUUUUGUaaacauauAUCAAUc -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAc-------UAGUUA- -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 61601 | 0.69 | 0.953871 |
Target: 5'- gAACCUGGCaGACUUUUCGUa------ -3' miRNA: 3'- -UUGGACCGgCUGAAAAGCAcuaguua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 67113 | 0.77 | 0.607917 |
Target: 5'- gAACCUGGCCGACUUUUCau-AUCAc- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGcacUAGUua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 67210 | 0.8 | 0.431486 |
Target: 5'- gAACCUGGCCGACUUUUCGauauUCAu- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCacu-AGUua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 67308 | 0.86 | 0.212105 |
Target: 5'- gAACCUGGCCGACUUUUCGauaagcGAUCGAc -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCa-----CUAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 67398 | 0.83 | 0.303368 |
Target: 5'- gAACCUGGCCGACUUUUCGUaauaaGUCAu- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAc----UAGUua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 76352 | 0.81 | 0.376521 |
Target: 5'- gAACCUGGCCGACUUUUCGUaaauuUUAAUg -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcu---AGUUA- -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 76479 | 0.87 | 0.185721 |
Target: 5'- gAACCUGGCCGACUUUUCGUuGAUUg-- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCA-CUAGuua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 89482 | 0.88 | 0.153665 |
Target: 5'- aAACCcGGCCGACUUUUCGUGGUUAAa -3' miRNA: 3'- -UUGGaCCGGCUGAAAAGCACUAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 89508 | 0.69 | 0.940019 |
Target: 5'- gAACgUGGCUGACUUUUCGUaGAa---- -3' miRNA: 3'- -UUGgACCGGCUGAAAAGCA-CUaguua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 89640 | 0.73 | 0.807452 |
Target: 5'- aAACCUGuCUGACUUUUCGUGucUCAAa -3' miRNA: 3'- -UUGGACcGGCUGAAAAGCACu-AGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 96498 | 0.7 | 0.923738 |
Target: 5'- uAACCUGGCCGACaaucUGaUGAUCGGc -3' miRNA: 3'- -UUGGACCGGCUGaaaaGC-ACUAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 97839 | 0.87 | 0.180804 |
Target: 5'- gAACgUGGCCGACUUUUCGUGAacgUCAAUg -3' miRNA: 3'- -UUGgACCGGCUGAAAAGCACU---AGUUA- -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 97896 | 0.72 | 0.834891 |
Target: 5'- gAACgUGGCCGACUUUUCGUa--CAAa -3' miRNA: 3'- -UUGgACCGGCUGAAAAGCAcuaGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 97953 | 0.72 | 0.834891 |
Target: 5'- gAACgUGGCCGACUUUUCGUa--CAAa -3' miRNA: 3'- -UUGgACCGGCUGAAAAGCAcuaGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 98010 | 0.72 | 0.834891 |
Target: 5'- gAACgUGGCCGACUUUUCGUa--CAAa -3' miRNA: 3'- -UUGgACCGGCUGAAAAGCAcuaGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 103480 | 0.94 | 0.069985 |
Target: 5'- gAACCUGGCCGACUUUUCGUGcUCAAa -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACuAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 103539 | 0.79 | 0.5115 |
Target: 5'- aAACCUGGCCGACUUUUUGaccAUCGAc -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCac-UAGUUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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