miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11654 5' -50.1 NC_003102.1 + 89640 0.73 0.807452
Target:  5'- aAACCUGuCUGACUUUUCGUGucUCAAa -3'
miRNA:   3'- -UUGGACcGGCUGAAAAGCACu-AGUUa -5'
11654 5' -50.1 NC_003102.1 + 89508 0.69 0.940019
Target:  5'- gAACgUGGCUGACUUUUCGUaGAa---- -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGCA-CUaguua -5'
11654 5' -50.1 NC_003102.1 + 89482 0.88 0.153665
Target:  5'- aAACCcGGCCGACUUUUCGUGGUUAAa -3'
miRNA:   3'- -UUGGaCCGGCUGAAAAGCACUAGUUa -5'
11654 5' -50.1 NC_003102.1 + 76479 0.87 0.185721
Target:  5'- gAACCUGGCCGACUUUUCGUuGAUUg-- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCA-CUAGuua -5'
11654 5' -50.1 NC_003102.1 + 76352 0.81 0.376521
Target:  5'- gAACCUGGCCGACUUUUCGUaaauuUUAAUg -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCAcu---AGUUA- -5'
11654 5' -50.1 NC_003102.1 + 67398 0.83 0.303368
Target:  5'- gAACCUGGCCGACUUUUCGUaauaaGUCAu- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCAc----UAGUua -5'
11654 5' -50.1 NC_003102.1 + 67308 0.86 0.212105
Target:  5'- gAACCUGGCCGACUUUUCGauaagcGAUCGAc -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCa-----CUAGUUa -5'
11654 5' -50.1 NC_003102.1 + 67210 0.8 0.431486
Target:  5'- gAACCUGGCCGACUUUUCGauauUCAu- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCacu-AGUua -5'
11654 5' -50.1 NC_003102.1 + 67113 0.77 0.607917
Target:  5'- gAACCUGGCCGACUUUUCau-AUCAc- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGcacUAGUua -5'
11654 5' -50.1 NC_003102.1 + 61601 0.69 0.953871
Target:  5'- gAACCUGGCaGACUUUUCGUa------ -3'
miRNA:   3'- -UUGGACCGgCUGAAAAGCAcuaguua -5'
11654 5' -50.1 NC_003102.1 + 61379 0.78 0.532484
Target:  5'- aAACCUGGCCGACUUUUUGUaaacauauAUCAAUc -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCAc-------UAGUUA- -5'
11654 5' -50.1 NC_003102.1 + 56085 0.76 0.651652
Target:  5'- gAACCUGGCCGACUUUUUa--GUCAAa -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGcacUAGUUa -5'
11654 5' -50.1 NC_003102.1 + 55993 0.74 0.768378
Target:  5'- gAACCUGGCCGACUUUUCaaaauaaAUCAu- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGcac----UAGUua -5'
11654 5' -50.1 NC_003102.1 + 54789 0.68 0.974708
Target:  5'- gAACCUGGCUGACUUUUUa-GAUUu-- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGcaCUAGuua -5'
11654 5' -50.1 NC_003102.1 + 54594 0.71 0.89822
Target:  5'- gAACCUGGCCGACUUUUUuuUGAc---- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGc-ACUaguua -5'
11654 5' -50.1 NC_003102.1 + 54314 0.68 0.965382
Target:  5'- cAACUUGGCCGACUUUUcaaaguauaaaCGUG-UUAAa -3'
miRNA:   3'- -UUGGACCGGCUGAAAA-----------GCACuAGUUa -5'
11654 5' -50.1 NC_003102.1 + 42895 0.86 0.201184
Target:  5'- gAACCUGGCCGACUUUUUGUGAauauguuuggUCAAc -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCACU----------AGUUa -5'
11654 5' -50.1 NC_003102.1 + 42728 0.67 0.979811
Target:  5'- cAACUUGuCUGACUUUUCGUGAaCAu- -3'
miRNA:   3'- -UUGGACcGGCUGAAAAGCACUaGUua -5'
11654 5' -50.1 NC_003102.1 + 42596 0.7 0.911519
Target:  5'- gAACCUGGCCGACcgcaaacUUGUGAuauuuUCAAa -3'
miRNA:   3'- -UUGGACCGGCUGaaa----AGCACU-----AGUUa -5'
11654 5' -50.1 NC_003102.1 + 36211 0.77 0.586135
Target:  5'- gAACCUGGCCGACUUUUUGUaauuuUUAAUa -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCAcu---AGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.