Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11654 | 5' | -50.1 | NC_003102.1 | + | 76479 | 0.87 | 0.185721 |
Target: 5'- gAACCUGGCCGACUUUUCGUuGAUUg-- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCA-CUAGuua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 97839 | 0.87 | 0.180804 |
Target: 5'- gAACgUGGCCGACUUUUCGUGAacgUCAAUg -3' miRNA: 3'- -UUGgACCGGCUGAAAAGCACU---AGUUA- -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 89482 | 0.88 | 0.153665 |
Target: 5'- aAACCcGGCCGACUUUUCGUGGUUAAa -3' miRNA: 3'- -UUGGaCCGGCUGAAAAGCACUAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 10732 | 0.89 | 0.149517 |
Target: 5'- gAACCUGGCCGACUUUUCGUGcugaAUCAc- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAC----UAGUua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 10815 | 0.89 | 0.13768 |
Target: 5'- uAACCUGGCCGACUUUUCGUGcUUAAg -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACuAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 10650 | 0.89 | 0.133929 |
Target: 5'- aAACCUGGCCGACUUUUCGUGuUUAAg -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACuAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 26190 | 0.9 | 0.130272 |
Target: 5'- gAACCUGGCCGACUUUUCGUGcUUAAg -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACuAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 26267 | 0.9 | 0.130272 |
Target: 5'- gAACCUGGCCGACUUUUCGUGuUUAAg -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACuAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 26107 | 0.9 | 0.126708 |
Target: 5'- gAACCUGGCCGACUUUUUGUGcUCAAa -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACuAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 10574 | 0.92 | 0.095734 |
Target: 5'- gAACCUGGCCGACUUUUCGUGAggcCAAc -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACUa--GUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 103480 | 0.94 | 0.069985 |
Target: 5'- gAACCUGGCCGACUUUUCGUGcUCAAa -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACuAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 26048 | 1.04 | 0.015336 |
Target: 5'- aAACCUGGCCGACUUUUCGUGAUCAAUa -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACUAGUUA- -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 25968 | 1.04 | 0.01489 |
Target: 5'- gAACCUGGCCGACUUUUCGUGAUCAAUa -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACUAGUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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