Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11654 | 5' | -50.1 | NC_003102.1 | + | 89640 | 0.73 | 0.807452 |
Target: 5'- aAACCUGuCUGACUUUUCGUGucUCAAa -3' miRNA: 3'- -UUGGACcGGCUGAAAAGCACu-AGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 55993 | 0.74 | 0.768378 |
Target: 5'- gAACCUGGCCGACUUUUCaaaauaaAUCAu- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGcac----UAGUua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 25836 | 0.74 | 0.758236 |
Target: 5'- gAACgUGGCCGACUUUUCGUaaacaGGUUAc- -3' miRNA: 3'- -UUGgACCGGCUGAAAAGCA-----CUAGUua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 104350 | 0.75 | 0.716503 |
Target: 5'- gAACCUGGCCGACUUUUUagaUGAcgCAAUu -3' miRNA: 3'- -UUGGACCGGCUGAAAAGc--ACUa-GUUA- -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 56085 | 0.76 | 0.651652 |
Target: 5'- gAACCUGGCCGACUUUUUa--GUCAAa -3' miRNA: 3'- -UUGGACCGGCUGAAAAGcacUAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 67113 | 0.77 | 0.607917 |
Target: 5'- gAACCUGGCCGACUUUUCau-AUCAc- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGcacUAGUua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 36211 | 0.77 | 0.586135 |
Target: 5'- gAACCUGGCCGACUUUUUGUaauuuUUAAUa -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcu---AGUUA- -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 61379 | 0.78 | 0.532484 |
Target: 5'- aAACCUGGCCGACUUUUUGUaaacauauAUCAAUc -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAc-------UAGUUA- -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 103539 | 0.79 | 0.5115 |
Target: 5'- aAACCUGGCCGACUUUUUGaccAUCGAc -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCac-UAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 103598 | 0.79 | 0.501137 |
Target: 5'- gAACCUGGCCGACUUUUUGaccAUCGAc -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCac-UAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 67210 | 0.8 | 0.431486 |
Target: 5'- gAACCUGGCCGACUUUUCGauauUCAu- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCacu-AGUua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 121813 | 0.81 | 0.376521 |
Target: 5'- gAACCUGGCCGACUUUUCGauaaGUCAu- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCac--UAGUua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 76352 | 0.81 | 0.376521 |
Target: 5'- gAACCUGGCCGACUUUUCGUaaauuUUAAUg -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcu---AGUUA- -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 104636 | 0.83 | 0.318632 |
Target: 5'- gAACCUGGCCGACUUUUUGUuGAUUg-- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCA-CUAGuua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 112569 | 0.83 | 0.310929 |
Target: 5'- gAACCUGGCCGACUUUUCGUuGA-CAu- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCA-CUaGUua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 67398 | 0.83 | 0.303368 |
Target: 5'- gAACCUGGCCGACUUUUCGUaauaaGUCAu- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAc----UAGUua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 104516 | 0.83 | 0.303368 |
Target: 5'- gAACCUGGCCGACUUUUCGUugacauguuuaGAUCu-- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCA-----------CUAGuua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 121893 | 0.84 | 0.288673 |
Target: 5'- gAACCUGGCCGACUUUUCGUacUUAAa -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcuAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 67308 | 0.86 | 0.212105 |
Target: 5'- gAACCUGGCCGACUUUUCGauaagcGAUCGAc -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCa-----CUAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 42895 | 0.86 | 0.201184 |
Target: 5'- gAACCUGGCCGACUUUUUGUGAauauguuuggUCAAc -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACU----------AGUUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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