Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11654 | 5' | -50.1 | NC_003102.1 | + | 104350 | 0.75 | 0.716503 |
Target: 5'- gAACCUGGCCGACUUUUUagaUGAcgCAAUu -3' miRNA: 3'- -UUGGACCGGCUGAAAAGc--ACUa-GUUA- -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 25836 | 0.74 | 0.758236 |
Target: 5'- gAACgUGGCCGACUUUUCGUaaacaGGUUAc- -3' miRNA: 3'- -UUGgACCGGCUGAAAAGCA-----CUAGUua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 130 | 0.67 | 0.979811 |
Target: 5'- cGCgaGGCCGACgag-CGUGAgcUCGAUc -3' miRNA: 3'- uUGgaCCGGCUGaaaaGCACU--AGUUA- -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 54314 | 0.68 | 0.965382 |
Target: 5'- cAACUUGGCCGACUUUUcaaaguauaaaCGUG-UUAAa -3' miRNA: 3'- -UUGGACCGGCUGAAAA-----------GCACuAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 112472 | 0.69 | 0.940019 |
Target: 5'- gAACCUGGCUGACUUUUCa-------- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGcacuaguua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 89508 | 0.69 | 0.940019 |
Target: 5'- gAACgUGGCUGACUUUUCGUaGAa---- -3' miRNA: 3'- -UUGgACCGGCUGAAAAGCA-CUaguua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 104287 | 0.7 | 0.929438 |
Target: 5'- uAACCUGGuuGACUUUUCGauaagccAUCGAc -3' miRNA: 3'- -UUGGACCggCUGAAAAGCac-----UAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 42596 | 0.7 | 0.911519 |
Target: 5'- gAACCUGGCCGACcgcaaacUUGUGAuauuuUCAAa -3' miRNA: 3'- -UUGGACCGGCUGaaa----AGCACU-----AGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 26362 | 0.72 | 0.843628 |
Target: 5'- gAACgUGGCCGACUUUUCGaGAaaGAUg -3' miRNA: 3'- -UUGgACCGGCUGAAAAGCaCUagUUA- -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 103657 | 0.72 | 0.834891 |
Target: 5'- gAACCUGGCCGACUcUUCauaGAUUGAa -3' miRNA: 3'- -UUGGACCGGCUGAaAAGca-CUAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 112653 | 0.73 | 0.816794 |
Target: 5'- gAACCUGuCUGACUUUUCGUGAaCAu- -3' miRNA: 3'- -UUGGACcGGCUGAAAAGCACUaGUua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 55993 | 0.74 | 0.768378 |
Target: 5'- gAACCUGGCCGACUUUUCaaaauaaAUCAu- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGcac----UAGUua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 103480 | 0.94 | 0.069985 |
Target: 5'- gAACCUGGCCGACUUUUCGUGcUCAAa -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACuAGUUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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