Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11654 | 5' | -50.1 | NC_003102.1 | + | 97839 | 0.87 | 0.180804 |
Target: 5'- gAACgUGGCCGACUUUUCGUGAacgUCAAUg -3' miRNA: 3'- -UUGgACCGGCUGAAAAGCACU---AGUUA- -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 89482 | 0.88 | 0.153665 |
Target: 5'- aAACCcGGCCGACUUUUCGUGGUUAAa -3' miRNA: 3'- -UUGGaCCGGCUGAAAAGCACUAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 10574 | 0.92 | 0.095734 |
Target: 5'- gAACCUGGCCGACUUUUCGUGAggcCAAc -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACUa--GUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 67113 | 0.77 | 0.607917 |
Target: 5'- gAACCUGGCCGACUUUUCau-AUCAc- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGcacUAGUua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 10732 | 0.89 | 0.149517 |
Target: 5'- gAACCUGGCCGACUUUUCGUGcugaAUCAc- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAC----UAGUua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 26190 | 0.9 | 0.130272 |
Target: 5'- gAACCUGGCCGACUUUUCGUGcUUAAg -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACuAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 26048 | 1.04 | 0.015336 |
Target: 5'- aAACCUGGCCGACUUUUCGUGAUCAAUa -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACUAGUUA- -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 42895 | 0.86 | 0.201184 |
Target: 5'- gAACCUGGCCGACUUUUUGUGAauauguuuggUCAAc -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACU----------AGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 10650 | 0.89 | 0.133929 |
Target: 5'- aAACCUGGCCGACUUUUCGUGuUUAAg -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACuAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 10815 | 0.89 | 0.13768 |
Target: 5'- uAACCUGGCCGACUUUUCGUGcUUAAg -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACuAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 55993 | 0.74 | 0.768378 |
Target: 5'- gAACCUGGCCGACUUUUCaaaauaaAUCAu- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGcac----UAGUua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 104350 | 0.75 | 0.716503 |
Target: 5'- gAACCUGGCCGACUUUUUagaUGAcgCAAUu -3' miRNA: 3'- -UUGGACCGGCUGAAAAGc--ACUa-GUUA- -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 104516 | 0.83 | 0.303368 |
Target: 5'- gAACCUGGCCGACUUUUCGUugacauguuuaGAUCu-- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCA-----------CUAGuua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 54314 | 0.68 | 0.965382 |
Target: 5'- cAACUUGGCCGACUUUUcaaaguauaaaCGUG-UUAAa -3' miRNA: 3'- -UUGGACCGGCUGAAAA-----------GCACuAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 130 | 0.67 | 0.979811 |
Target: 5'- cGCgaGGCCGACgag-CGUGAgcUCGAUc -3' miRNA: 3'- uUGgaCCGGCUGaaaaGCACU--AGUUA- -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 76352 | 0.81 | 0.376521 |
Target: 5'- gAACCUGGCCGACUUUUCGUaaauuUUAAUg -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcu---AGUUA- -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 56085 | 0.76 | 0.651652 |
Target: 5'- gAACCUGGCCGACUUUUUa--GUCAAa -3' miRNA: 3'- -UUGGACCGGCUGAAAAGcacUAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 103598 | 0.79 | 0.501137 |
Target: 5'- gAACCUGGCCGACUUUUUGaccAUCGAc -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCac-UAGUUa -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 112653 | 0.73 | 0.816794 |
Target: 5'- gAACCUGuCUGACUUUUCGUGAaCAu- -3' miRNA: 3'- -UUGGACcGGCUGAAAAGCACUaGUua -5' |
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11654 | 5' | -50.1 | NC_003102.1 | + | 89508 | 0.69 | 0.940019 |
Target: 5'- gAACgUGGCUGACUUUUCGUaGAa---- -3' miRNA: 3'- -UUGgACCGGCUGAAAAGCA-CUaguua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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