miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11655 3' -47.7 NC_003102.1 + 42591 0.8 0.614732
Target:  5'- -uAAUCGAACCUGGCCGACcgcaaacUUGUg -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGaaa----AACA- -5'
11655 3' -47.7 NC_003102.1 + 26053 0.8 0.647592
Target:  5'- -aGAUCaAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- ucUUAGcUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 10655 0.79 0.691158
Target:  5'- -aAAUCaAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- ucUUAGcUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 137156 0.75 0.857645
Target:  5'- uGAAUCGAACgC-GGCCGACUUUUc-- -3'
miRNA:   3'- uCUUAGCUUG-GaCCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 137233 0.75 0.857645
Target:  5'- uGAAUCGAACgC-GGCCGACUUUUc-- -3'
miRNA:   3'- uCUUAGCUUG-GaCCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 25830 0.75 0.873698
Target:  5'- -cGAUCuGAACgUGGCCGACUUUUcGUa -3'
miRNA:   3'- ucUUAG-CUUGgACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 76617 0.75 0.881357
Target:  5'- cGAuUUGAACgUGGCCGACUUUUc-- -3'
miRNA:   3'- uCUuAGCUUGgACCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 104774 0.75 0.881357
Target:  5'- cGAuUUGAACgUGGCCGACUUUUc-- -3'
miRNA:   3'- uCUuAGCUUGgACCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 42592 0.73 0.933141
Target:  5'- uGAAUUGAACUUGuCCGACUUUUUa- -3'
miRNA:   3'- uCUUAGCUUGGACcGGCUGAAAAAca -5'
11655 3' -47.7 NC_003102.1 + 112610 0.73 0.933141
Target:  5'- cGAAUCGAACgUGuCCGACUUUUaGUu -3'
miRNA:   3'- uCUUAGCUUGgACcGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 23423 0.73 0.943369
Target:  5'- -cAAUCGcccGGCCUGGCCGACUguuacgGUg -3'
miRNA:   3'- ucUUAGC---UUGGACCGGCUGAaaaa--CA- -5'
11655 3' -47.7 NC_003102.1 + 26501 0.72 0.952519
Target:  5'- cGAuUCGAACCUGGCUaACUUUUc-- -3'
miRNA:   3'- uCUuAGCUUGGACCGGcUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 121962 0.72 0.952519
Target:  5'- cGAuUUGAACgUGGCCGACUUg---- -3'
miRNA:   3'- uCUuAGCUUGgACCGGCUGAAaaaca -5'
11655 3' -47.7 NC_003102.1 + 133282 0.72 0.960619
Target:  5'- uGGGAcacAACCUGGCCGGCUUUUa-- -3'
miRNA:   3'- -UCUUagcUUGGACCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 112647 0.72 0.964288
Target:  5'- cGAuUCGAACCUGuCUGACUUUUcGUg -3'
miRNA:   3'- uCUuAGCUUGGACcGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 137197 0.71 0.979087
Target:  5'- -aAAUCGAACgUGGCCaACUUUUcgUGUa -3'
miRNA:   3'- ucUUAGCUUGgACCGGcUGAAAA--ACA- -5'
11655 3' -47.7 NC_003102.1 + 112791 0.7 0.985431
Target:  5'- cGAAUCGAACgUGuCUGACUUUUUa- -3'
miRNA:   3'- uCUUAGCUUGgACcGGCUGAAAAAca -5'
11655 3' -47.7 NC_003102.1 + 121675 0.7 0.987179
Target:  5'- cGAAUCGAACgUGuCUGACUUUUcGUa -3'
miRNA:   3'- uCUUAGCUUGgACcGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 112707 0.7 0.987179
Target:  5'- cGAAUCGAACgUGuCUGACUUUUcGUg -3'
miRNA:   3'- uCUUAGCUUGgACcGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 89505 0.7 0.987179
Target:  5'- ---uUUGAACgUGGCUGACUUUUcGUa -3'
miRNA:   3'- ucuuAGCUUGgACCGGCUGAAAAaCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.