miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11655 3' -47.7 NC_003102.1 + 61607 0.86 0.355768
Target:  5'- cGAAUCGAACCUGGCaGACUUUUcGUa -3'
miRNA:   3'- uCUUAGCUUGGACCGgCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 36236 0.86 0.355768
Target:  5'- cGAAUUGAACgUGGCCGACUUUUcaUGUa -3'
miRNA:   3'- uCUUAGCUUGgACCGGCUGAAAA--ACA- -5'
11655 3' -47.7 NC_003102.1 + 54794 0.87 0.323154
Target:  5'- -uAAUCGAACCUGGCUGACUUUUUa- -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAAca -5'
11655 3' -47.7 NC_003102.1 + 26356 0.87 0.323154
Target:  5'- cGAAUCGAACgUGGCCGACUUUUcGa -3'
miRNA:   3'- uCUUAGCUUGgACCGGCUGAAAAaCa -5'
11655 3' -47.7 NC_003102.1 + 26331 0.87 0.315357
Target:  5'- -aAAUCGAAUUUGGCCGACUUUUUGg -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAACa -5'
11655 3' -47.7 NC_003102.1 + 104510 0.88 0.292823
Target:  5'- cGuuUCGAACCUGGCCGACUUUUcGUu -3'
miRNA:   3'- uCuuAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 55988 0.88 0.264762
Target:  5'- -aAAUCGAACCUGGCCGACUUUUc-- -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 121819 0.89 0.258096
Target:  5'- cGAuUCGAACCUGGCCGACUUUUcGa -3'
miRNA:   3'- uCUuAGCUUGGACCGGCUGAAAAaCa -5'
11655 3' -47.7 NC_003102.1 + 26717 0.9 0.226809
Target:  5'- cGAAUCGAACgUGGCCGACUUUUUa- -3'
miRNA:   3'- uCUUAGCUUGgACCGGCUGAAAAAca -5'
11655 3' -47.7 NC_003102.1 + 76474 0.9 0.215222
Target:  5'- -aAAUCGAACCUGGCCGACUUUUcGUu -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 112563 0.9 0.215222
Target:  5'- cGAuUCGAACCUGGCCGACUUUUcGUu -3'
miRNA:   3'- uCUuAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 54599 0.9 0.209621
Target:  5'- -aAAUCGAACCUGGCCGACUUUUUu- -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAAca -5'
11655 3' -47.7 NC_003102.1 + 121898 0.91 0.183471
Target:  5'- -aAAUCGAACCUGGCCGACUUUUcGUa -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 103475 0.91 0.183471
Target:  5'- -aAAUCGAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 10738 0.91 0.183471
Target:  5'- cGAuUCGAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- uCUuAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 76347 0.91 0.183471
Target:  5'- -aAAUCGAACCUGGCCGACUUUUcGUa -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 26272 0.91 0.183471
Target:  5'- -aAAUCGAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 25973 0.92 0.16467
Target:  5'- -aGAUCGAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 56080 0.92 0.160247
Target:  5'- -aGAUCGAACCUGGCCGACUUUUUa- -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAAca -5'
11655 3' -47.7 NC_003102.1 + 61373 0.95 0.114997
Target:  5'- cGAAUCaAACCUGGCCGACUUUUUGUa -3'
miRNA:   3'- uCUUAGcUUGGACCGGCUGAAAAACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.