miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11656 3' -48.6 NC_003102.1 + 112630 0.77 0.70486
Target:  5'- aAAAAGUCaGaCACGUUCGAUUCGAAc -3'
miRNA:   3'- cUUUUCAGcCgGUGCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 10659 0.79 0.650861
Target:  5'- cGAAAAGUCGGCCAgGUUaGAUUCa-- -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAgCUAAGcuu -5'
11656 3' -48.6 NC_003102.1 + 54471 0.79 0.62907
Target:  5'- uGAAAAGUCGGCCAag-UUGAUUUGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUgcaAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 121797 0.8 0.596427
Target:  5'- cGAAacAAGUCGGCCACGUUCaaaUCGAAc -3'
miRNA:   3'- -CUU--UUCAGCCGGUGCAAGcuaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 112628 0.8 0.564049
Target:  5'- uGAAAAGUCaGCCAgGUUCGAaUCGAAc -3'
miRNA:   3'- -CUUUUCAGcCGGUgCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 26170 0.8 0.553354
Target:  5'- aAAAAGUCGGCCAaaUUCGAUUUGAAc -3'
miRNA:   3'- cUUUUCAGCCGGUgcAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 103753 0.82 0.490703
Target:  5'- aAAAAGUCGGCCAgGUUCGAUUUa-- -3'
miRNA:   3'- cUUUUCAGCCGGUgCAAGCUAAGcuu -5'
11656 3' -48.6 NC_003102.1 + 121837 0.82 0.460623
Target:  5'- cGAAAAGUCaGaCACGUUCGAUUCGAAc -3'
miRNA:   3'- -CUUUUCAGcCgGUGCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 10756 0.82 0.460623
Target:  5'- cGAAAAGUCaGaCACGUUCGAUUCGAAc -3'
miRNA:   3'- -CUUUUCAGcCgGUGCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 112545 0.82 0.460623
Target:  5'- cGAAAAGUCaGaCACGUUCGAUUCGAAc -3'
miRNA:   3'- -CUUUUCAGcCgGUGCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 56241 0.82 0.460623
Target:  5'- aAAAAGUCGGCCAgGUUCGAUcUGAAc -3'
miRNA:   3'- cUUUUCAGCCGGUgCAAGCUAaGCUU- -5'
11656 3' -48.6 NC_003102.1 + 25892 0.83 0.441121
Target:  5'- cGAAAAGUCGGCCAgGUUUGAUcUGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUAaGCUU- -5'
11656 3' -48.6 NC_003102.1 + 121737 0.84 0.359587
Target:  5'- cGAAAAGUCGGCCAgGUUCG-UUUGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCuAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 25951 0.85 0.342955
Target:  5'- aAAAAGUCGGCCAgGUUCGAUUCu-- -3'
miRNA:   3'- cUUUUCAGCCGGUgCAAGCUAAGcuu -5'
11656 3' -48.6 NC_003102.1 + 103636 0.85 0.334849
Target:  5'- cGAAAAGUCGGCCAgGUUCGAUUUu-- -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUAAGcuu -5'
11656 3' -48.6 NC_003102.1 + 103694 0.86 0.303838
Target:  5'- aAAAAGUCGGCCAgGUUUGAUUUGAAc -3'
miRNA:   3'- cUUUUCAGCCGGUgCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 104672 0.86 0.296439
Target:  5'- cGAAAAGUCGGCCAgGUUCGAaaCGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUaaGCUU- -5'
11656 3' -48.6 NC_003102.1 + 76455 0.87 0.282062
Target:  5'- uGAAAAGUCGGCCACGUUCaaaUCGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUGCAAGcuaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 104612 0.87 0.282062
Target:  5'- uGAAAAGUCGGCCACGUUCaaaUCGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUGCAAGcuaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 25812 0.87 0.268243
Target:  5'- cGAAAAGUCGGCCAgGUUCGAUcUGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUAaGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.