miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11656 3' -48.6 NC_003102.1 + 17136 0.69 0.979248
Target:  5'- aAAAGGcCGGCCACG-UCGGUcuguacggguUCGGAa -3'
miRNA:   3'- cUUUUCaGCCGGUGCaAGCUA----------AGCUU- -5'
11656 3' -48.6 NC_003102.1 + 67421 0.7 0.974066
Target:  5'- aAAAAGUCaGaCACGUUCGAaUCGAAc -3'
miRNA:   3'- cUUUUCAGcCgGUGCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 67331 0.7 0.974066
Target:  5'- aAAAAGUCaGaCACGUUCGAaUCGAAc -3'
miRNA:   3'- cUUUUCAGcCgGUGCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 137215 0.7 0.968001
Target:  5'- cGAAAAGUCaGaCACGUUUGAaUCGAAc -3'
miRNA:   3'- -CUUUUCAGcCgGUGCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 67137 0.7 0.968001
Target:  5'- cGAAAAGUCaGaCACGUUUGAaUCGAAc -3'
miRNA:   3'- -CUUUUCAGcCgGUGCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 137292 0.7 0.968001
Target:  5'- cGAAAAGUCaGaCACGUUUGAaUCGAAc -3'
miRNA:   3'- -CUUUUCAGcCgGUGCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 137138 0.7 0.968001
Target:  5'- cGAAAAGUCaGaCACGUUUGAaUCGAAc -3'
miRNA:   3'- -CUUUUCAGcCgGUGCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 91345 0.71 0.960993
Target:  5'- uGAGcGG-CGGCCGCGUcCGAgUCGAAu -3'
miRNA:   3'- -CUUuUCaGCCGGUGCAaGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 89236 0.71 0.960993
Target:  5'- cAAAAGUCaGCCAaGUUUGAUUUGAAc -3'
miRNA:   3'- cUUUUCAGcCGGUgCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 104492 0.72 0.933841
Target:  5'- cGAAAAGUCuGaCACGUUCGuUUCGAAc -3'
miRNA:   3'- -CUUUUCAGcCgGUGCAAGCuAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 103633 0.73 0.910382
Target:  5'- cGAAAAGUCGGaCGCGUUCaaaUCGAAc -3'
miRNA:   3'- -CUUUUCAGCCgGUGCAAGcuaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 132216 0.73 0.89704
Target:  5'- aAAAAGUCGGCCGCGUUUGuUUUu-- -3'
miRNA:   3'- cUUUUCAGCCGGUGCAAGCuAAGcuu -5'
11656 3' -48.6 NC_003102.1 + 42748 0.74 0.882653
Target:  5'- ---cGGUCGGCCAgGUUCGAUUa--- -3'
miRNA:   3'- cuuuUCAGCCGGUgCAAGCUAAgcuu -5'
11656 3' -48.6 NC_003102.1 + 104326 0.75 0.842385
Target:  5'- cGAAAAGUCaGaCACGUUCGAaUCGAAc -3'
miRNA:   3'- -CUUUUCAGcCgGUGCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 26735 0.75 0.842385
Target:  5'- cGAAAAGUCaGaCACGUUCGAaUCGAAc -3'
miRNA:   3'- -CUUUUCAGcCgGUGCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 26338 0.75 0.833651
Target:  5'- gGAAAAGUUaGCCAgGUUCGAaUCGAAc -3'
miRNA:   3'- -CUUUUCAGcCGGUgCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 97797 0.75 0.824708
Target:  5'- cGAAAAGU-GGCCACGUUCGAU-Ca-- -3'
miRNA:   3'- -CUUUUCAgCCGGUGCAAGCUAaGcuu -5'
11656 3' -48.6 NC_003102.1 + 10728 0.76 0.78705
Target:  5'- ---uAGUUGGCCAgGUUUGAUUUGAAc -3'
miRNA:   3'- cuuuUCAGCCGGUgCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 89596 0.77 0.746868
Target:  5'- cGAAAAGUCGGaCACGUUCaAUUUGAAc -3'
miRNA:   3'- -CUUUUCAGCCgGUGCAAGcUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 90757 0.77 0.726048
Target:  5'- --cGAGUCGaucaCCACGUUCGAUUCGGg -3'
miRNA:   3'- cuuUUCAGCc---GGUGCAAGCUAAGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.