miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11656 3' -48.6 NC_003102.1 + 26735 0.75 0.842385
Target:  5'- cGAAAAGUCaGaCACGUUCGAaUCGAAc -3'
miRNA:   3'- -CUUUUCAGcCgGUGCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 35473 0.68 0.990236
Target:  5'- -cGAAGaCGGCCGCG-UCGAUccgugCGAAg -3'
miRNA:   3'- cuUUUCaGCCGGUGCaAGCUAa----GCUU- -5'
11656 3' -48.6 NC_003102.1 + 36073 0.94 0.107787
Target:  5'- uGAAAAGUCGGCCACGUUCaAUUCGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUGCAAGcUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 36188 0.69 0.987256
Target:  5'- uAAAAGUCGGaCACGUUCaaaUCGAAc -3'
miRNA:   3'- cUUUUCAGCCgGUGCAAGcuaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 36367 0.9 0.176675
Target:  5'- aAAAAGUCGGCCAgGUUCGAUUUGAAc -3'
miRNA:   3'- cUUUUCAGCCGGUgCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 42740 0.9 0.176675
Target:  5'- aAAAAGUCGGCCAgGUUCGAUUUGAAc -3'
miRNA:   3'- cUUUUCAGCCGGUgCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 42748 0.74 0.882653
Target:  5'- ---cGGUCGGCCAgGUUCGAUUa--- -3'
miRNA:   3'- cuuuUCAGCCGGUgCAAGCUAAgcuu -5'
11656 3' -48.6 NC_003102.1 + 54439 0.9 0.176675
Target:  5'- aAAAAGUCGGCCAgGUUCGAUUUGAAc -3'
miRNA:   3'- cUUUUCAGCCGGUgCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 54471 0.79 0.62907
Target:  5'- uGAAAAGUCGGCCAag-UUGAUUUGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUgcaAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 54617 0.69 0.987256
Target:  5'- uAAAAGUCGGaCACGUUCaaaUCGAAc -3'
miRNA:   3'- cUUUUCAGCCgGUGCAAGcuaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 54634 0.68 0.990236
Target:  5'- aAAAAGUCaGCCAgGUUCGAUUa--- -3'
miRNA:   3'- cUUUUCAGcCGGUgCAAGCUAAgcuu -5'
11656 3' -48.6 NC_003102.1 + 56150 0.94 0.101914
Target:  5'- uGAAAAGUCGGCCAgGUUCGAUUUGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 56241 0.82 0.460623
Target:  5'- aAAAAGUCGGCCAgGUUCGAUcUGAAc -3'
miRNA:   3'- cUUUUCAGCCGGUgCAAGCUAaGCUU- -5'
11656 3' -48.6 NC_003102.1 + 57886 0.67 0.995337
Target:  5'- aAAAAGcgccaCGGCCACGUUCGc--CGAGa -3'
miRNA:   3'- cUUUUCa----GCCGGUGCAAGCuaaGCUU- -5'
11656 3' -48.6 NC_003102.1 + 61355 0.66 0.998647
Target:  5'- aGAAAAGUCaGaCACGUUCGAaUCa-- -3'
miRNA:   3'- -CUUUUCAGcCgGUGCAAGCUaAGcuu -5'
11656 3' -48.6 NC_003102.1 + 61445 0.88 0.248546
Target:  5'- cGAAAAGUCuGCCAgGUUCGAUUCGAAc -3'
miRNA:   3'- -CUUUUCAGcCGGUgCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 61534 0.9 0.176675
Target:  5'- aAAAAGUCGGCCAgGUUUGAUUCGAAc -3'
miRNA:   3'- cUUUUCAGCCGGUgCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 61627 0.66 0.998891
Target:  5'- uGAAacAAGUCaGaCGCGUUCGAaUCGAAc -3'
miRNA:   3'- -CUU--UUCAGcCgGUGCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 66383 0.67 0.995337
Target:  5'- -----aUCGGCCAUGUUCGAagCGu- -3'
miRNA:   3'- cuuuucAGCCGGUGCAAGCUaaGCuu -5'
11656 3' -48.6 NC_003102.1 + 66956 0.9 0.181475
Target:  5'- uGAAAAGUCGGCCAgGUUCGAUUCa-- -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUAAGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.