miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11656 3' -48.6 NC_003102.1 + 281 0.67 0.995337
Target:  5'- ----cGUCGGCCucGCGUUCGAgagcaUCGu- -3'
miRNA:   3'- cuuuuCAGCCGG--UGCAAGCUa----AGCuu -5'
11656 3' -48.6 NC_003102.1 + 10417 0.9 0.19142
Target:  5'- cGAAAAGUCGGCCAgGUUCGAUUCu-- -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUAAGcuu -5'
11656 3' -48.6 NC_003102.1 + 10494 0.91 0.167415
Target:  5'- cGAAAAGUCGGCCAgGUUUGAUUUGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 10576 0.92 0.146144
Target:  5'- cGAAAAGUCGGCCAgGUUCGAaUCGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 10659 0.79 0.650861
Target:  5'- cGAAAAGUCGGCCAgGUUaGAUUCa-- -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAgCUAAGcuu -5'
11656 3' -48.6 NC_003102.1 + 10728 0.76 0.78705
Target:  5'- ---uAGUUGGCCAgGUUUGAUUUGAAc -3'
miRNA:   3'- cuuuUCAGCCGGUgCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 10756 0.82 0.460623
Target:  5'- cGAAAAGUCaGaCACGUUCGAUUCGAAc -3'
miRNA:   3'- -CUUUUCAGcCgGUGCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 16884 0.66 0.997985
Target:  5'- ----uGUCGGCgGCGaacgagaUUUGAUUCGGAu -3'
miRNA:   3'- cuuuuCAGCCGgUGC-------AAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 17136 0.69 0.979248
Target:  5'- aAAAGGcCGGCCACG-UCGGUcuguacggguUCGGAa -3'
miRNA:   3'- cUUUUCaGCCGGUGCaAGCUA----------AGCUU- -5'
11656 3' -48.6 NC_003102.1 + 23262 0.67 0.996032
Target:  5'- ---cAGUCGGCCAggcCGggCGAUugcaUCGGAc -3'
miRNA:   3'- cuuuUCAGCCGGU---GCaaGCUA----AGCUU- -5'
11656 3' -48.6 NC_003102.1 + 25812 0.87 0.268243
Target:  5'- cGAAAAGUCGGCCAgGUUCGAUcUGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUAaGCUU- -5'
11656 3' -48.6 NC_003102.1 + 25892 0.83 0.441121
Target:  5'- cGAAAAGUCGGCCAgGUUUGAUcUGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUAaGCUU- -5'
11656 3' -48.6 NC_003102.1 + 25951 0.85 0.342955
Target:  5'- aAAAAGUCGGCCAgGUUCGAUUCu-- -3'
miRNA:   3'- cUUUUCAGCCGGUgCAAGCUAAGcuu -5'
11656 3' -48.6 NC_003102.1 + 25992 0.89 0.20184
Target:  5'- cGAAAAGUCGGCCACGUUCaGAU-CGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUGCAAG-CUAaGCUU- -5'
11656 3' -48.6 NC_003102.1 + 26033 0.9 0.19142
Target:  5'- cGAAAAGUCGGCCAgGUUCGAUUCu-- -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUAAGcuu -5'
11656 3' -48.6 NC_003102.1 + 26110 0.95 0.093666
Target:  5'- cGAAAAGUCGGCCAgGUUCGAUUUGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 26170 0.8 0.553354
Target:  5'- aAAAAGUCGGCCAaaUUCGAUUUGAAc -3'
miRNA:   3'- cUUUUCAGCCGGUgcAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 26338 0.75 0.833651
Target:  5'- gGAAAAGUUaGCCAgGUUCGAaUCGAAc -3'
miRNA:   3'- -CUUUUCAGcCGGUgCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 26519 1.07 0.018005
Target:  5'- cGAAAAGUCGGCCACGUUCGAUUCGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUGCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 26556 1.02 0.035278
Target:  5'- aAAAAGUCGGCCACGUUCGAUUCGAAc -3'
miRNA:   3'- cUUUUCAGCCGGUGCAAGCUAAGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.