Results 1 - 20 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11656 | 3' | -48.6 | NC_003102.1 | + | 26519 | 1.07 | 0.018005 |
Target: 5'- cGAAAAGUCGGCCACGUUCGAUUCGAAc -3' miRNA: 3'- -CUUUUCAGCCGGUGCAAGCUAAGCUU- -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 26556 | 1.02 | 0.035278 |
Target: 5'- aAAAAGUCGGCCACGUUCGAUUCGAAc -3' miRNA: 3'- cUUUUCAGCCGGUGCAAGCUAAGCUU- -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 67151 | 0.99 | 0.051421 |
Target: 5'- cGAAAAGUCGGCCAgGUUCGAUUCGAAc -3' miRNA: 3'- -CUUUUCAGCCGGUgCAAGCUAAGCUU- -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 67241 | 0.99 | 0.051421 |
Target: 5'- cGAAAAGUCGGCCAgGUUCGAUUCGAAc -3' miRNA: 3'- -CUUUUCAGCCGGUgCAAGCUAAGCUU- -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 137035 | 0.98 | 0.061113 |
Target: 5'- cGAAAAGUUGGCCACGUUCGAUUUGAAc -3' miRNA: 3'- -CUUUUCAGCCGGUGCAAGCUAAGCUU- -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 137319 | 0.97 | 0.07466 |
Target: 5'- uGAAAAGUCGGCCGCGUUCGAUUCa-- -3' miRNA: 3'- -CUUUUCAGCCGGUGCAAGCUAAGcuu -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 137395 | 0.97 | 0.07466 |
Target: 5'- uGAAAAGUCGGCCGCGUUCGAUUCa-- -3' miRNA: 3'- -CUUUUCAGCCGGUGCAAGCUAAGcuu -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 26110 | 0.95 | 0.093666 |
Target: 5'- cGAAAAGUCGGCCAgGUUCGAUUUGAAc -3' miRNA: 3'- -CUUUUCAGCCGGUgCAAGCUAAGCUU- -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 76508 | 0.95 | 0.093666 |
Target: 5'- cGAAAAGUCGGCCAgGUUCGAUUUGAAc -3' miRNA: 3'- -CUUUUCAGCCGGUgCAAGCUAAGCUU- -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 76635 | 0.95 | 0.093666 |
Target: 5'- cGAAAAGUCGGCCAgGUUCGAUUUGAAc -3' miRNA: 3'- -CUUUUCAGCCGGUgCAAGCUAAGCUU- -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 103813 | 0.95 | 0.099091 |
Target: 5'- uGAAGAGUCGGCCAgGUUCGAUUUGAAc -3' miRNA: 3'- -CUUUUCAGCCGGUgCAAGCUAAGCUU- -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 104505 | 0.95 | 0.099091 |
Target: 5'- aAAAAGUCGGCCAgGUUCGAUUCGAAc -3' miRNA: 3'- cUUUUCAGCCGGUgCAAGCUAAGCUU- -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 56150 | 0.94 | 0.101914 |
Target: 5'- uGAAAAGUCGGCCAgGUUCGAUUUGAAc -3' miRNA: 3'- -CUUUUCAGCCGGUgCAAGCUAAGCUU- -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 36073 | 0.94 | 0.107787 |
Target: 5'- uGAAAAGUCGGCCACGUUCaAUUCGAAc -3' miRNA: 3'- -CUUUUCAGCCGGUGCAAGcUAAGCUU- -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 121657 | 0.92 | 0.146144 |
Target: 5'- cGAAAAGUCGGCCAgGUUCGAaUCGAAc -3' miRNA: 3'- -CUUUUCAGCCGGUgCAAGCUaAGCUU- -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 112725 | 0.92 | 0.146144 |
Target: 5'- cGAAAAGUCGGCCAgGUUCGAaUCGAAc -3' miRNA: 3'- -CUUUUCAGCCGGUgCAAGCUaAGCUU- -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 10576 | 0.92 | 0.146144 |
Target: 5'- cGAAAAGUCGGCCAgGUUCGAaUCGAAc -3' miRNA: 3'- -CUUUUCAGCCGGUgCAAGCUaAGCUU- -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 67053 | 0.91 | 0.167415 |
Target: 5'- cGAAAAGUCGGCCAgGUUCGAUUCa-- -3' miRNA: 3'- -CUUUUCAGCCGGUgCAAGCUAAGcuu -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 10494 | 0.91 | 0.167415 |
Target: 5'- cGAAAAGUCGGCCAgGUUUGAUUUGAAc -3' miRNA: 3'- -CUUUUCAGCCGGUgCAAGCUAAGCUU- -5' |
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11656 | 3' | -48.6 | NC_003102.1 | + | 54439 | 0.9 | 0.176675 |
Target: 5'- aAAAAGUCGGCCAgGUUCGAUUUGAAc -3' miRNA: 3'- cUUUUCAGCCGGUgCAAGCUAAGCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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