miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11656 3' -48.6 NC_003102.1 + 61445 0.88 0.248546
Target:  5'- cGAAAAGUCuGCCAgGUUCGAUUCGAAc -3'
miRNA:   3'- -CUUUUCAGcCGGUgCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 66956 0.9 0.181475
Target:  5'- uGAAAAGUCGGCCAgGUUCGAUUCa-- -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUAAGcuu -5'
11656 3' -48.6 NC_003102.1 + 10417 0.9 0.19142
Target:  5'- cGAAAAGUCGGCCAgGUUCGAUUCu-- -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUAAGcuu -5'
11656 3' -48.6 NC_003102.1 + 26033 0.9 0.19142
Target:  5'- cGAAAAGUCGGCCAgGUUCGAUUCu-- -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUAAGcuu -5'
11656 3' -48.6 NC_003102.1 + 89326 0.89 0.20184
Target:  5'- cGAAAAGUCGGCCGgGUUUGAUUUGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 97683 0.88 0.224162
Target:  5'- cGAAAAGUCGGCCACGUUCGAU-Ca-- -3'
miRNA:   3'- -CUUUUCAGCCGGUGCAAGCUAaGcuu -5'
11656 3' -48.6 NC_003102.1 + 97740 0.88 0.224162
Target:  5'- cGAAAAGUCGGCCACGUUCGAU-Ca-- -3'
miRNA:   3'- -CUUUUCAGCCGGUGCAAGCUAaGcuu -5'
11656 3' -48.6 NC_003102.1 + 97853 0.88 0.224162
Target:  5'- cGAAAAGUCGGCCACGUUCGAU-Ca-- -3'
miRNA:   3'- -CUUUUCAGCCGGUGCAAGCUAaGcuu -5'
11656 3' -48.6 NC_003102.1 + 112449 0.88 0.230061
Target:  5'- uAAAAGUCGGaCACGUUCGAUUCGAAc -3'
miRNA:   3'- cUUUUCAGCCgGUGCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 54439 0.9 0.176675
Target:  5'- aAAAAGUCGGCCAgGUUCGAUUUGAAc -3'
miRNA:   3'- cUUUUCAGCCGGUgCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 42740 0.9 0.176675
Target:  5'- aAAAAGUCGGCCAgGUUCGAUUUGAAc -3'
miRNA:   3'- cUUUUCAGCCGGUgCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 67053 0.91 0.167415
Target:  5'- cGAAAAGUCGGCCAgGUUCGAUUCa-- -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUAAGcuu -5'
11656 3' -48.6 NC_003102.1 + 67151 0.99 0.051421
Target:  5'- cGAAAAGUCGGCCAgGUUCGAUUCGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 67241 0.99 0.051421
Target:  5'- cGAAAAGUCGGCCAgGUUCGAUUCGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 137035 0.98 0.061113
Target:  5'- cGAAAAGUUGGCCACGUUCGAUUUGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUGCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 26110 0.95 0.093666
Target:  5'- cGAAAAGUCGGCCAgGUUCGAUUUGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 36073 0.94 0.107787
Target:  5'- uGAAAAGUCGGCCACGUUCaAUUCGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUGCAAGcUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 10576 0.92 0.146144
Target:  5'- cGAAAAGUCGGCCAgGUUCGAaUCGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 121657 0.92 0.146144
Target:  5'- cGAAAAGUCGGCCAgGUUCGAaUCGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 10494 0.91 0.167415
Target:  5'- cGAAAAGUCGGCCAgGUUUGAUUUGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUAAGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.