miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11656 3' -48.6 NC_003102.1 + 61627 0.66 0.998891
Target:  5'- uGAAacAAGUCaGaCGCGUUCGAaUCGAAc -3'
miRNA:   3'- -CUU--UUCAGcCgGUGCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 132216 0.73 0.89704
Target:  5'- aAAAAGUCGGCCGCGUUUGuUUUu-- -3'
miRNA:   3'- cUUUUCAGCCGGUGCAAGCuAAGcuu -5'
11656 3' -48.6 NC_003102.1 + 26735 0.75 0.842385
Target:  5'- cGAAAAGUCaGaCACGUUCGAaUCGAAc -3'
miRNA:   3'- -CUUUUCAGcCgGUGCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 26519 1.07 0.018005
Target:  5'- cGAAAAGUCGGCCACGUUCGAUUCGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUGCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 112809 0.67 0.995337
Target:  5'- cGAAAAGUCaGaCAgGUUCGAaUCGAAc -3'
miRNA:   3'- -CUUUUCAGcCgGUgCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 281 0.67 0.995337
Target:  5'- ----cGUCGGCCucGCGUUCGAgagcaUCGu- -3'
miRNA:   3'- cuuuuCAGCCGG--UGCAAGCUa----AGCuu -5'
11656 3' -48.6 NC_003102.1 + 112923 0.67 0.994546
Target:  5'- cGAAAAGUUGGCCAgGUUCa------- -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGcuaagcuu -5'
11656 3' -48.6 NC_003102.1 + 110667 0.68 0.99365
Target:  5'- ----uGUCGGCCACGUcgUUGA--CGAAa -3'
miRNA:   3'- cuuuuCAGCCGGUGCA--AGCUaaGCUU- -5'
11656 3' -48.6 NC_003102.1 + 54617 0.69 0.987256
Target:  5'- uAAAAGUCGGaCACGUUCaaaUCGAAc -3'
miRNA:   3'- cUUUUCAGCCgGUGCAAGcuaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 91345 0.71 0.960993
Target:  5'- uGAGcGG-CGGCCGCGUcCGAgUCGAAu -3'
miRNA:   3'- -CUUuUCaGCCGGUGCAaGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 67331 0.7 0.974066
Target:  5'- aAAAAGUCaGaCACGUUCGAaUCGAAc -3'
miRNA:   3'- cUUUUCAGcCgGUGCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 35473 0.68 0.990236
Target:  5'- -cGAAGaCGGCCGCG-UCGAUccgugCGAAg -3'
miRNA:   3'- cuUUUCaGCCGGUGCaAGCUAa----GCUU- -5'
11656 3' -48.6 NC_003102.1 + 67233 0.66 0.998891
Target:  5'- aAAAAGUCaGaCACGUUUGAaUCGAAc -3'
miRNA:   3'- cUUUUCAGcCgGUGCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 67421 0.7 0.974066
Target:  5'- aAAAAGUCaGaCACGUUCGAaUCGAAc -3'
miRNA:   3'- cUUUUCAGcCgGUGCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 16884 0.66 0.997985
Target:  5'- ----uGUCGGCgGCGaacgagaUUUGAUUCGGAu -3'
miRNA:   3'- cuuuuCAGCCGgUGC-------AAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 89664 0.68 0.990236
Target:  5'- cGAAAAGUCaGCCACGUUCa------- -3'
miRNA:   3'- -CUUUUCAGcCGGUGCAAGcuaagcuu -5'
11656 3' -48.6 NC_003102.1 + 67137 0.7 0.968001
Target:  5'- cGAAAAGUCaGaCACGUUUGAaUCGAAc -3'
miRNA:   3'- -CUUUUCAGcCgGUGCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 42748 0.74 0.882653
Target:  5'- ---cGGUCGGCCAgGUUCGAUUa--- -3'
miRNA:   3'- cuuuUCAGCCGGUgCAAGCUAAgcuu -5'
11656 3' -48.6 NC_003102.1 + 129919 0.66 0.997627
Target:  5'- ----cGUCGGCgAUGUUuacgagCGAUUCGAu -3'
miRNA:   3'- cuuuuCAGCCGgUGCAA------GCUAAGCUu -5'
11656 3' -48.6 NC_003102.1 + 66383 0.67 0.995337
Target:  5'- -----aUCGGCCAUGUUCGAagCGu- -3'
miRNA:   3'- cuuuucAGCCGGUGCAAGCUaaGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.