miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11656 3' -48.6 NC_003102.1 + 61534 0.9 0.176675
Target:  5'- aAAAAGUCGGCCAgGUUUGAUUCGAAc -3'
miRNA:   3'- cUUUUCAGCCGGUgCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 42740 0.9 0.176675
Target:  5'- aAAAAGUCGGCCAgGUUCGAUUUGAAc -3'
miRNA:   3'- cUUUUCAGCCGGUgCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 54439 0.9 0.176675
Target:  5'- aAAAAGUCGGCCAgGUUCGAUUUGAAc -3'
miRNA:   3'- cUUUUCAGCCGGUgCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 36367 0.9 0.176675
Target:  5'- aAAAAGUCGGCCAgGUUCGAUUUGAAc -3'
miRNA:   3'- cUUUUCAGCCGGUgCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 66956 0.9 0.181475
Target:  5'- uGAAAAGUCGGCCAgGUUCGAUUCa-- -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUAAGcuu -5'
11656 3' -48.6 NC_003102.1 + 10417 0.9 0.19142
Target:  5'- cGAAAAGUCGGCCAgGUUCGAUUCu-- -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUAAGcuu -5'
11656 3' -48.6 NC_003102.1 + 26033 0.9 0.19142
Target:  5'- cGAAAAGUCGGCCAgGUUCGAUUCu-- -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUAAGcuu -5'
11656 3' -48.6 NC_003102.1 + 89326 0.89 0.20184
Target:  5'- cGAAAAGUCGGCCGgGUUUGAUUUGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 25992 0.89 0.20184
Target:  5'- cGAAAAGUCGGCCACGUUCaGAU-CGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUGCAAG-CUAaGCUU- -5'
11656 3' -48.6 NC_003102.1 + 97740 0.88 0.224162
Target:  5'- cGAAAAGUCGGCCACGUUCGAU-Ca-- -3'
miRNA:   3'- -CUUUUCAGCCGGUGCAAGCUAaGcuu -5'
11656 3' -48.6 NC_003102.1 + 97683 0.88 0.224162
Target:  5'- cGAAAAGUCGGCCACGUUCGAU-Ca-- -3'
miRNA:   3'- -CUUUUCAGCCGGUGCAAGCUAaGcuu -5'
11656 3' -48.6 NC_003102.1 + 97853 0.88 0.224162
Target:  5'- cGAAAAGUCGGCCACGUUCGAU-Ca-- -3'
miRNA:   3'- -CUUUUCAGCCGGUGCAAGCUAaGcuu -5'
11656 3' -48.6 NC_003102.1 + 112449 0.88 0.230061
Target:  5'- uAAAAGUCGGaCACGUUCGAUUCGAAc -3'
miRNA:   3'- cUUUUCAGCCgGUGCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 61445 0.88 0.248546
Target:  5'- cGAAAAGUCuGCCAgGUUCGAUUCGAAc -3'
miRNA:   3'- -CUUUUCAGcCGGUgCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 25812 0.87 0.268243
Target:  5'- cGAAAAGUCGGCCAgGUUCGAUcUGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUAaGCUU- -5'
11656 3' -48.6 NC_003102.1 + 104612 0.87 0.282062
Target:  5'- uGAAAAGUCGGCCACGUUCaaaUCGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUGCAAGcuaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 76455 0.87 0.282062
Target:  5'- uGAAAAGUCGGCCACGUUCaaaUCGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUGCAAGcuaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 104672 0.86 0.296439
Target:  5'- cGAAAAGUCGGCCAgGUUCGAaaCGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUaaGCUU- -5'
11656 3' -48.6 NC_003102.1 + 103694 0.86 0.303838
Target:  5'- aAAAAGUCGGCCAgGUUUGAUUUGAAc -3'
miRNA:   3'- cUUUUCAGCCGGUgCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 103636 0.85 0.334849
Target:  5'- cGAAAAGUCGGCCAgGUUCGAUUUu-- -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUAAGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.