miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11656 3' -48.6 NC_003102.1 + 137395 0.97 0.07466
Target:  5'- uGAAAAGUCGGCCGCGUUCGAUUCa-- -3'
miRNA:   3'- -CUUUUCAGCCGGUGCAAGCUAAGcuu -5'
11656 3' -48.6 NC_003102.1 + 137319 0.97 0.07466
Target:  5'- uGAAAAGUCGGCCGCGUUCGAUUCa-- -3'
miRNA:   3'- -CUUUUCAGCCGGUGCAAGCUAAGcuu -5'
11656 3' -48.6 NC_003102.1 + 137292 0.7 0.968001
Target:  5'- cGAAAAGUCaGaCACGUUUGAaUCGAAc -3'
miRNA:   3'- -CUUUUCAGcCgGUGCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 137215 0.7 0.968001
Target:  5'- cGAAAAGUCaGaCACGUUUGAaUCGAAc -3'
miRNA:   3'- -CUUUUCAGcCgGUGCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 137138 0.7 0.968001
Target:  5'- cGAAAAGUCaGaCACGUUUGAaUCGAAc -3'
miRNA:   3'- -CUUUUCAGcCgGUGCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 137035 0.98 0.061113
Target:  5'- cGAAAAGUUGGCCACGUUCGAUUUGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUGCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 132216 0.73 0.89704
Target:  5'- aAAAAGUCGGCCGCGUUUGuUUUu-- -3'
miRNA:   3'- cUUUUCAGCCGGUGCAAGCuAAGcuu -5'
11656 3' -48.6 NC_003102.1 + 129919 0.66 0.997627
Target:  5'- ----cGUCGGCgAUGUUuacgagCGAUUCGAu -3'
miRNA:   3'- cuuuuCAGCCGgUGCAA------GCUAAGCUu -5'
11656 3' -48.6 NC_003102.1 + 121837 0.82 0.460623
Target:  5'- cGAAAAGUCaGaCACGUUCGAUUCGAAc -3'
miRNA:   3'- -CUUUUCAGcCgGUGCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 121797 0.8 0.596427
Target:  5'- cGAAacAAGUCGGCCACGUUCaaaUCGAAc -3'
miRNA:   3'- -CUU--UUCAGCCGGUGCAAGcuaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 121737 0.84 0.359587
Target:  5'- cGAAAAGUCGGCCAgGUUCG-UUUGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCuAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 121657 0.92 0.146144
Target:  5'- cGAAAAGUCGGCCAgGUUCGAaUCGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 114257 0.66 0.998021
Target:  5'- cGAGAAaucGUCgaGGCgACGUaCGAUUCGGAc -3'
miRNA:   3'- -CUUUU---CAG--CCGgUGCAaGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 113737 0.69 0.985525
Target:  5'- --uGAG-CGGCCGCcacgUCGAUUCGGu -3'
miRNA:   3'- cuuUUCaGCCGGUGca--AGCUAAGCUu -5'
11656 3' -48.6 NC_003102.1 + 112923 0.67 0.994546
Target:  5'- cGAAAAGUUGGCCAgGUUCa------- -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGcuaagcuu -5'
11656 3' -48.6 NC_003102.1 + 112809 0.67 0.995337
Target:  5'- cGAAAAGUCaGaCAgGUUCGAaUCGAAc -3'
miRNA:   3'- -CUUUUCAGcCgGUgCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 112725 0.92 0.146144
Target:  5'- cGAAAAGUCGGCCAgGUUCGAaUCGAAc -3'
miRNA:   3'- -CUUUUCAGCCGGUgCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 112630 0.77 0.70486
Target:  5'- aAAAAGUCaGaCACGUUCGAUUCGAAc -3'
miRNA:   3'- cUUUUCAGcCgGUGCAAGCUAAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 112628 0.8 0.564049
Target:  5'- uGAAAAGUCaGCCAgGUUCGAaUCGAAc -3'
miRNA:   3'- -CUUUUCAGcCGGUgCAAGCUaAGCUU- -5'
11656 3' -48.6 NC_003102.1 + 112545 0.82 0.460623
Target:  5'- cGAAAAGUCaGaCACGUUCGAUUCGAAc -3'
miRNA:   3'- -CUUUUCAGcCgGUGCAAGCUAAGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.