miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11658 3' -51.3 NC_003102.1 + 116593 0.66 0.991199
Target:  5'- aGAGCACAACGuGACCauuauuUugGAUGGa -3'
miRNA:   3'- -CUCGUGUUGC-UUGGgcu---AugCUGCUg -5'
11658 3' -51.3 NC_003102.1 + 37451 0.66 0.991079
Target:  5'- --aCGCAAU--GCCCGuaaucgaGUACGACGACg -3'
miRNA:   3'- cucGUGUUGcuUGGGC-------UAUGCUGCUG- -5'
11658 3' -51.3 NC_003102.1 + 107648 0.66 0.989801
Target:  5'- cGGGCGCAcACGuugGCaCCGAUAUGuucaauuGCGGCg -3'
miRNA:   3'- -CUCGUGU-UGCu--UG-GGCUAUGC-------UGCUG- -5'
11658 3' -51.3 NC_003102.1 + 17506 0.66 0.988532
Target:  5'- -uGUAuCAACGGAUCCGAUguacagaucGCGuCGGCg -3'
miRNA:   3'- cuCGU-GUUGCUUGGGCUA---------UGCuGCUG- -5'
11658 3' -51.3 NC_003102.1 + 25630 0.66 0.988532
Target:  5'- gGAGCAaa--GAuuACgCCGAcgACGACGACa -3'
miRNA:   3'- -CUCGUguugCU--UG-GGCUa-UGCUGCUG- -5'
11658 3' -51.3 NC_003102.1 + 60156 0.66 0.986981
Target:  5'- uGAGCaACGGCGAaaacaAUCUGAgcggaaGCGGCGAUa -3'
miRNA:   3'- -CUCG-UGUUGCU-----UGGGCUa-----UGCUGCUG- -5'
11658 3' -51.3 NC_003102.1 + 47181 0.66 0.985275
Target:  5'- cGGGCACGGugaauauauCGAACUCGG-ACGGCGcCg -3'
miRNA:   3'- -CUCGUGUU---------GCUUGGGCUaUGCUGCuG- -5'
11658 3' -51.3 NC_003102.1 + 82825 0.66 0.985275
Target:  5'- cGAGCGCucuaGAAC---GUACGACGACa -3'
miRNA:   3'- -CUCGUGuug-CUUGggcUAUGCUGCUG- -5'
11658 3' -51.3 NC_003102.1 + 31650 0.66 0.984546
Target:  5'- aGAGUACGccGCGAuagcgggACCCGAUuauuuguacaacguGCG-CGACg -3'
miRNA:   3'- -CUCGUGU--UGCU-------UGGGCUA--------------UGCuGCUG- -5'
11658 3' -51.3 NC_003102.1 + 105512 0.67 0.983402
Target:  5'- -----gAGCGGugCCGAUaacaGCGGCGACg -3'
miRNA:   3'- cucgugUUGCUugGGCUA----UGCUGCUG- -5'
11658 3' -51.3 NC_003102.1 + 62026 0.67 0.983402
Target:  5'- cGGCgACGACGGcaucAUCCGAUGaaacCGACGAUc -3'
miRNA:   3'- cUCG-UGUUGCU----UGGGCUAU----GCUGCUG- -5'
11658 3' -51.3 NC_003102.1 + 119699 0.67 0.979125
Target:  5'- cAGCGCAACaacGACUaagaCGAcgACGACGACg -3'
miRNA:   3'- cUCGUGUUGc--UUGG----GCUa-UGCUGCUG- -5'
11658 3' -51.3 NC_003102.1 + 419 0.67 0.979125
Target:  5'- uAGCGCAgcACGcGCuCCGAUGCGAuccCGAg -3'
miRNA:   3'- cUCGUGU--UGCuUG-GGCUAUGCU---GCUg -5'
11658 3' -51.3 NC_003102.1 + 4357 0.67 0.976703
Target:  5'- -cGUACAAaGAGCCCGugauuUugGAUGAUa -3'
miRNA:   3'- cuCGUGUUgCUUGGGCu----AugCUGCUG- -5'
11658 3' -51.3 NC_003102.1 + 57498 0.67 0.976703
Target:  5'- aGAGCGC-----GCCCGGacCGACGACg -3'
miRNA:   3'- -CUCGUGuugcuUGGGCUauGCUGCUG- -5'
11658 3' -51.3 NC_003102.1 + 19508 0.67 0.97408
Target:  5'- cGGGCACAAacuCGuGCCUGAUGaauuCGACGuACa -3'
miRNA:   3'- -CUCGUGUU---GCuUGGGCUAU----GCUGC-UG- -5'
11658 3' -51.3 NC_003102.1 + 46511 0.67 0.97408
Target:  5'- cAGCACGuccucCGAAgUCGAcgGCGugGACa -3'
miRNA:   3'- cUCGUGUu----GCUUgGGCUa-UGCugCUG- -5'
11658 3' -51.3 NC_003102.1 + 57294 0.68 0.97125
Target:  5'- aAGUcaACAACGGuCUCGAUgAUGGCGACa -3'
miRNA:   3'- cUCG--UGUUGCUuGGGCUA-UGCUGCUG- -5'
11658 3' -51.3 NC_003102.1 + 112176 0.68 0.96391
Target:  5'- uGAGUGCGuaauacucaugaggAUGGGCUCGAuucgaaagauugUACGACGACa -3'
miRNA:   3'- -CUCGUGU--------------UGCUUGGGCU------------AUGCUGCUG- -5'
11658 3' -51.3 NC_003102.1 + 12385 0.68 0.963564
Target:  5'- cGGGCACcaacauggccuauACGAAUCCGuugaacGCGACGAUg -3'
miRNA:   3'- -CUCGUGu------------UGCUUGGGCua----UGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.