Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11659 | 5' | -59.1 | NC_003102.1 | + | 33268 | 0.73 | 0.366999 |
Target: 5'- -aCAacGCCGUgcagucGCCGCCGCcGCCGaCAGg -3' miRNA: 3'- gaGU--UGGCAa-----CGGCGGCGuCGGC-GUC- -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 134537 | 0.76 | 0.226215 |
Target: 5'- -gCGACCGccGCCGCCGCcGCCGCc- -3' miRNA: 3'- gaGUUGGCaaCGGCGGCGuCGGCGuc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 80717 | 0.77 | 0.205236 |
Target: 5'- -cCGAUCGUUGCUGCCGCuGCUGCu- -3' miRNA: 3'- gaGUUGGCAACGGCGGCGuCGGCGuc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 46027 | 0.84 | 0.069704 |
Target: 5'- aUCGACCGUaGCCGCCGCcGCCGCu- -3' miRNA: 3'- gAGUUGGCAaCGGCGGCGuCGGCGuc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 66922 | 0.7 | 0.499013 |
Target: 5'- gUCGucgUCGUcGCCGCCGCAGUCGUc- -3' miRNA: 3'- gAGUu--GGCAaCGGCGGCGUCGGCGuc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 78115 | 0.68 | 0.614781 |
Target: 5'- aUCAgGCCGUgaugaacgugucgaUGCUGCCGC--CCGCAGa -3' miRNA: 3'- gAGU-UGGCA--------------ACGGCGGCGucGGCGUC- -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 60362 | 0.68 | 0.617818 |
Target: 5'- aUC-GCCGccGCCGCCGCcGCUGCc- -3' miRNA: 3'- gAGuUGGCaaCGGCGGCGuCGGCGuc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 16620 | 0.67 | 0.688501 |
Target: 5'- uUUGACCuGUUggaccGCCGCCGCGaCUGCGGa -3' miRNA: 3'- gAGUUGG-CAA-----CGGCGGCGUcGGCGUC- -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 78049 | 0.67 | 0.698482 |
Target: 5'- -aUAAUCGUacgGCCGCCGCGGagauaUGCAa -3' miRNA: 3'- gaGUUGGCAa--CGGCGGCGUCg----GCGUc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 81550 | 0.67 | 0.708409 |
Target: 5'- gUCGACgCGgucGCCGUCGCAGacgaCGCGu -3' miRNA: 3'- gAGUUG-GCaa-CGGCGGCGUCg---GCGUc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 63242 | 0.66 | 0.756914 |
Target: 5'- uCUgGACCG-UGCCGCCGCcgAGaUCGUg- -3' miRNA: 3'- -GAgUUGGCaACGGCGGCG--UC-GGCGuc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 50496 | 0.66 | 0.756914 |
Target: 5'- --aGACCGUUGUCGuuGCaaacGGUCGCu- -3' miRNA: 3'- gagUUGGCAACGGCggCG----UCGGCGuc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 32573 | 0.96 | 0.009631 |
Target: 5'- uCUCAACCGUUGCCGCC-CAGCCGCAGc -3' miRNA: 3'- -GAGUUGGCAACGGCGGcGUCGGCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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