Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11659 | 5' | -59.1 | NC_003102.1 | + | 34968 | 0.68 | 0.65225 |
Target: 5'- gCUCAAUUGUUGuCCGagaguguaaugauccUCGUAGCCGCGu -3' miRNA: 3'- -GAGUUGGCAAC-GGC---------------GGCGUCGGCGUc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 92959 | 0.68 | 0.658316 |
Target: 5'- cCUCuACUGUUGCUGaCGCcGCCGCc- -3' miRNA: 3'- -GAGuUGGCAACGGCgGCGuCGGCGuc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 80530 | 0.67 | 0.667401 |
Target: 5'- aUC-ACCGUUGCgaCGCCaacaugagcagcaGCAGCgGCAGc -3' miRNA: 3'- gAGuUGGCAACG--GCGG-------------CGUCGgCGUC- -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 20627 | 0.67 | 0.668409 |
Target: 5'- -cCAACuCGUcGUCGUCGUAGUCGCGa -3' miRNA: 3'- gaGUUG-GCAaCGGCGGCGUCGGCGUc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 16620 | 0.67 | 0.688501 |
Target: 5'- uUUGACCuGUUggaccGCCGCCGCGaCUGCGGa -3' miRNA: 3'- gAGUUGG-CAA-----CGGCGGCGUcGGCGUC- -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 58657 | 0.67 | 0.688501 |
Target: 5'- gUCGA-CGUcGCCGUCGCAGUCgGCAu -3' miRNA: 3'- gAGUUgGCAaCGGCGGCGUCGG-CGUc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 78049 | 0.67 | 0.698482 |
Target: 5'- -aUAAUCGUacgGCCGCCGCGGagauaUGCAa -3' miRNA: 3'- gaGUUGGCAa--CGGCGGCGUCg----GCGUc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 81550 | 0.67 | 0.708409 |
Target: 5'- gUCGACgCGgucGCCGUCGCAGacgaCGCGu -3' miRNA: 3'- gAGUUG-GCaa-CGGCGGCGUCg---GCGUc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 3736 | 0.67 | 0.708409 |
Target: 5'- aUCGGCgGUgGCUGCUGCuGCUGCu- -3' miRNA: 3'- gAGUUGgCAaCGGCGGCGuCGGCGuc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 45006 | 0.66 | 0.728063 |
Target: 5'- -aCAGCCGcUUGCC-UUGCAGCUGUAu -3' miRNA: 3'- gaGUUGGC-AACGGcGGCGUCGGCGUc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 111406 | 0.66 | 0.745477 |
Target: 5'- uUUAGCgGUggcgaugaugacGCCGCCGCcGCCGCc- -3' miRNA: 3'- gAGUUGgCAa-----------CGGCGGCGuCGGCGuc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 63242 | 0.66 | 0.756914 |
Target: 5'- uCUgGACCG-UGCCGCCGCcgAGaUCGUg- -3' miRNA: 3'- -GAgUUGGCaACGGCGGCG--UC-GGCGuc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 50496 | 0.66 | 0.756914 |
Target: 5'- --aGACCGUUGUCGuuGCaaacGGUCGCu- -3' miRNA: 3'- gagUUGGCAACGGCggCG----UCGGCGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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