Results 61 - 67 of 67 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 11666 | 3' | -51.5 | NC_003102.1 | + | 48346 | 0.66 | 0.990177 |
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Target: 5'- gGCAaUGAUgACUACGugagaacCGAUGACGuGCu -3' miRNA: 3'- -UGUaACUAgUGAUGCc------GCUGCUGC-CG- -5' |
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| 11666 | 3' | -51.5 | NC_003102.1 | + | 1563 | 0.66 | 0.991055 |
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Target: 5'- -uGUUGAUCGgUAggcaggaucgauugUGGCGGCGGUGGUg -3' miRNA: 3'- ugUAACUAGUgAU--------------GCCGCUGCUGCCG- -5' |
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| 11666 | 3' | -51.5 | NC_003102.1 | + | 24826 | 0.66 | 0.991411 |
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Target: 5'- gAC-UUGAUCAUggUGGCGcCGAUGuGCa -3' miRNA: 3'- -UGuAACUAGUGauGCCGCuGCUGC-CG- -5' |
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| 11666 | 3' | -51.5 | NC_003102.1 | + | 119188 | 0.66 | 0.991411 |
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Target: 5'- cCAggGAUCG-UACGGCGucuCGcACGGUu -3' miRNA: 3'- uGUaaCUAGUgAUGCCGCu--GC-UGCCG- -5' |
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| 11666 | 3' | -51.5 | NC_003102.1 | + | 58835 | 0.66 | 0.991411 |
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Target: 5'- gUAUUGAUCAagaUGauGCcgacuGCGACGGCg -3' miRNA: 3'- uGUAACUAGUg--AUgcCGc----UGCUGCCG- -5' |
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| 11666 | 3' | -51.5 | NC_003102.1 | + | 114957 | 0.66 | 0.991411 |
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Target: 5'- uACGauaGUCACgGCGGUGuccaaaggcaACGGCGGCg -3' miRNA: 3'- -UGUaacUAGUGaUGCCGC----------UGCUGCCG- -5' |
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| 11666 | 3' | -51.5 | NC_003102.1 | + | 19174 | 0.66 | 0.991411 |
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Target: 5'- cACGUUGAUCGCgucguugaGGaCGACGcuuguguaccCGGCg -3' miRNA: 3'- -UGUAACUAGUGaug-----CC-GCUGCu---------GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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