Results 41 - 60 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11666 | 3' | -51.5 | NC_003102.1 | + | 73583 | 0.67 | 0.971938 |
Target: 5'- ----cGAUCACguugAUGGCGuacgcucCGAUGGCu -3' miRNA: 3'- uguaaCUAGUGa---UGCCGCu------GCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 19727 | 0.67 | 0.971938 |
Target: 5'- uACGUaaUGA-CAU--CGGCGuCGGCGGCg -3' miRNA: 3'- -UGUA--ACUaGUGauGCCGCuGCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 57310 | 0.67 | 0.974436 |
Target: 5'- gACAUU-AUCACUcuaaaagucaacaACGGUcucGAUGAUGGCg -3' miRNA: 3'- -UGUAAcUAGUGA-------------UGCCG---CUGCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 41610 | 0.67 | 0.977264 |
Target: 5'- gGCAagGGcgcuaauccuUCGCU-CGGCGACGAaaacguugaCGGCg -3' miRNA: 3'- -UGUaaCU----------AGUGAuGCCGCUGCU---------GCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 114950 | 0.67 | 0.979629 |
Target: 5'- ----cGGUCACauUGGCGGucaaGACGGCa -3' miRNA: 3'- uguaaCUAGUGauGCCGCUg---CUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 6586 | 0.66 | 0.983804 |
Target: 5'- cGCA-UGA-CGCUACcgauGGUGACGuuGGCg -3' miRNA: 3'- -UGUaACUaGUGAUG----CCGCUGCugCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 127450 | 0.66 | 0.98437 |
Target: 5'- uACAUUGAaaauaaucgcaUCACggaugugcacguaaaGGCGAccaaCGACGGCg -3' miRNA: 3'- -UGUAACU-----------AGUGaug------------CCGCU----GCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 17747 | 0.66 | 0.985632 |
Target: 5'- -----------gGCGGCGGCGGCGGUg -3' miRNA: 3'- uguaacuagugaUGCCGCUGCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 87975 | 0.66 | 0.985632 |
Target: 5'- cGCAgucAUCACgguagaaGGCGcaGCGGCGGCu -3' miRNA: 3'- -UGUaacUAGUGaug----CCGC--UGCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 131833 | 0.66 | 0.987297 |
Target: 5'- ----cGAUCAUUugauggaaucgACaGGCGACG-CGGCa -3' miRNA: 3'- uguaaCUAGUGA-----------UG-CCGCUGCuGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 46578 | 0.66 | 0.987297 |
Target: 5'- ---gUGAUCAaaacauuugACGaaGACGACGGCa -3' miRNA: 3'- uguaACUAGUga-------UGCcgCUGCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 36533 | 0.66 | 0.987297 |
Target: 5'- aACAUUGGaUACcggACGGcCGACGGauCGGUg -3' miRNA: 3'- -UGUAACUaGUGa--UGCC-GCUGCU--GCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 17484 | 0.66 | 0.987297 |
Target: 5'- ----aGAUCGCguCGGCGGguauguCGAUGGCg -3' miRNA: 3'- uguaaCUAGUGauGCCGCU------GCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 59511 | 0.66 | 0.987297 |
Target: 5'- aGCGgcGA-CGCgACGGCGGCaACGGUu -3' miRNA: 3'- -UGUaaCUaGUGaUGCCGCUGcUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 42374 | 0.66 | 0.988809 |
Target: 5'- ----aGAUCAgCUggaacguguggaACGGCGGCGGaGGCg -3' miRNA: 3'- uguaaCUAGU-GA------------UGCCGCUGCUgCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 10791 | 0.66 | 0.988809 |
Target: 5'- ---aUGAguucCACUACGGCGccCGAUGcGCu -3' miRNA: 3'- uguaACUa---GUGAUGCCGCu-GCUGC-CG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 113006 | 0.66 | 0.988809 |
Target: 5'- gGCggUGGUgGuguCGGCGGUGGCGGCa -3' miRNA: 3'- -UGuaACUAgUgauGCCGCUGCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 48346 | 0.66 | 0.990177 |
Target: 5'- gGCAaUGAUgACUACGugagaacCGAUGACGuGCu -3' miRNA: 3'- -UGUaACUAgUGAUGCc------GCUGCUGC-CG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 18377 | 0.66 | 0.990177 |
Target: 5'- aGCA-UGAUCuugGCGGuCGcguuccaaaACGGCGGCg -3' miRNA: 3'- -UGUaACUAGugaUGCC-GC---------UGCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 13237 | 0.66 | 0.990177 |
Target: 5'- -aGUUGAUguCUACGGCGA-GACcGUu -3' miRNA: 3'- ugUAACUAguGAUGCCGCUgCUGcCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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