miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11666 3' -51.5 NC_003102.1 + 37874 0.73 0.807963
Target:  5'- --------gGCgGCGGCGGCGGCGGCg -3'
miRNA:   3'- uguaacuagUGaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 133908 0.73 0.807963
Target:  5'- uGCGgcGA-CACUACGGCGGCugcgacGCGGCc -3'
miRNA:   3'- -UGUaaCUaGUGAUGCCGCUGc-----UGCCG- -5'
11666 3' -51.5 NC_003102.1 + 38920 0.72 0.851014
Target:  5'- ---gUGGUCAaaagcgGCGGCGACGACGa- -3'
miRNA:   3'- uguaACUAGUga----UGCCGCUGCUGCcg -5'
11666 3' -51.5 NC_003102.1 + 74057 0.72 0.851014
Target:  5'- cGCAaaugGAUUuuugGCUAgaGGCGACGACGGUu -3'
miRNA:   3'- -UGUaa--CUAG----UGAUg-CCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 90049 0.71 0.88884
Target:  5'- ---aUGAcaUC-CUGucUGGCGGCGGCGGCg -3'
miRNA:   3'- uguaACU--AGuGAU--GCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 135081 0.7 0.902332
Target:  5'- ----aGAUUGgagAgGGCGACGACGGCg -3'
miRNA:   3'- uguaaCUAGUga-UgCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 130511 0.7 0.90871
Target:  5'- aACAUUGAUauuuGCaagACGGCGAgGAaaaCGGCu -3'
miRNA:   3'- -UGUAACUAg---UGa--UGCCGCUgCU---GCCG- -5'
11666 3' -51.5 NC_003102.1 + 46158 0.7 0.90871
Target:  5'- gGCAaUG-UCGuugAUGGCGGCGGCGGUg -3'
miRNA:   3'- -UGUaACuAGUga-UGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 19483 0.7 0.90871
Target:  5'- aACAUUGAUUgucCgggugGCGGCGACGACa-- -3'
miRNA:   3'- -UGUAACUAGu--Ga----UGCCGCUGCUGccg -5'
11666 3' -51.5 NC_003102.1 + 21453 0.69 0.931713
Target:  5'- ----cGAUCGgU-CGGCGGCGAUGcGCg -3'
miRNA:   3'- uguaaCUAGUgAuGCCGCUGCUGC-CG- -5'
11666 3' -51.5 NC_003102.1 + 135873 0.69 0.93733
Target:  5'- aACuguUUGAaaaguaUCACgguaauucaauuucUGGCGACGACGGCg -3'
miRNA:   3'- -UGu--AACU------AGUGau------------GCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 128713 0.69 0.946316
Target:  5'- ---cUGAgCGCgUAUaGCGGCGACGGCg -3'
miRNA:   3'- uguaACUaGUG-AUGcCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 121095 0.69 0.95026
Target:  5'- ----cGGUCGCUcguugauguCGGCGACGacgccguGCGGCa -3'
miRNA:   3'- uguaaCUAGUGAu--------GCCGCUGC-------UGCCG- -5'
11666 3' -51.5 NC_003102.1 + 6639 0.68 0.954812
Target:  5'- gGCGUUGGU-GCUGCugauggugcuGGUGACGuuGGCg -3'
miRNA:   3'- -UGUAACUAgUGAUG----------CCGCUGCugCCG- -5'
11666 3' -51.5 NC_003102.1 + 118308 0.68 0.962347
Target:  5'- cACAUguuugGAUaguagACgggAUGGCGuGCGACGGCg -3'
miRNA:   3'- -UGUAa----CUAg----UGa--UGCCGC-UGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 23766 0.68 0.962347
Target:  5'- gACAUUaGA-UugUACGuGuCGAUGGCGGCa -3'
miRNA:   3'- -UGUAA-CUaGugAUGC-C-GCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 63845 0.68 0.962347
Target:  5'- -aAUUGAUCAagcGCGGCGuCGACGu- -3'
miRNA:   3'- ugUAACUAGUga-UGCCGCuGCUGCcg -5'
11666 3' -51.5 NC_003102.1 + 40325 0.68 0.965766
Target:  5'- ----cGAUCGCUucggcgagauGgGGCGACGA-GGCg -3'
miRNA:   3'- uguaaCUAGUGA----------UgCCGCUGCUgCCG- -5'
11666 3' -51.5 NC_003102.1 + 102047 0.68 0.965766
Target:  5'- uCAUcGaAUCGaaGCGGCGGCGGUGGCg -3'
miRNA:   3'- uGUAaC-UAGUgaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 1643 0.68 0.968961
Target:  5'- -gAUUGAUUguGgUAaaggUGGUGGCGGCGGCg -3'
miRNA:   3'- ugUAACUAG--UgAU----GCCGCUGCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.