miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11666 3' -51.5 NC_003102.1 + 37874 0.73 0.807963
Target:  5'- --------gGCgGCGGCGGCGGCGGCg -3'
miRNA:   3'- uguaacuagUGaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 38920 0.72 0.851014
Target:  5'- ---gUGGUCAaaagcgGCGGCGACGACGa- -3'
miRNA:   3'- uguaACUAGUga----UGCCGCUGCUGCcg -5'
11666 3' -51.5 NC_003102.1 + 40325 0.68 0.965766
Target:  5'- ----cGAUCGCUucggcgagauGgGGCGACGA-GGCg -3'
miRNA:   3'- uguaaCUAGUGA----------UgCCGCUGCUgCCG- -5'
11666 3' -51.5 NC_003102.1 + 41610 0.67 0.977264
Target:  5'- gGCAagGGcgcuaauccuUCGCU-CGGCGACGAaaacguugaCGGCg -3'
miRNA:   3'- -UGUaaCU----------AGUGAuGCCGCUGCU---------GCCG- -5'
11666 3' -51.5 NC_003102.1 + 42374 0.66 0.988809
Target:  5'- ----aGAUCAgCUggaacguguggaACGGCGGCGGaGGCg -3'
miRNA:   3'- uguaaCUAGU-GA------------UGCCGCUGCUgCCG- -5'
11666 3' -51.5 NC_003102.1 + 45847 0.75 0.700142
Target:  5'- aGCGgcGAUagaagagGCaGCGGCGGCGGCGGCu -3'
miRNA:   3'- -UGUaaCUAg------UGaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 46158 0.7 0.90871
Target:  5'- gGCAaUG-UCGuugAUGGCGGCGGCGGUg -3'
miRNA:   3'- -UGUaACuAGUga-UGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 46578 0.66 0.987297
Target:  5'- ---gUGAUCAaaacauuugACGaaGACGACGGCa -3'
miRNA:   3'- uguaACUAGUga-------UGCcgCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 48346 0.66 0.990177
Target:  5'- gGCAaUGAUgACUACGugagaacCGAUGACGuGCu -3'
miRNA:   3'- -UGUaACUAgUGAUGCc------GCUGCUGC-CG- -5'
11666 3' -51.5 NC_003102.1 + 49019 0.82 0.357489
Target:  5'- cGCAUUcaagcGA-CGCgGCGGCGGCGACGGCg -3'
miRNA:   3'- -UGUAA-----CUaGUGaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 57067 0.76 0.647909
Target:  5'- gACggUGAcCACUAUGGUggaggcggaGGCGACGGCa -3'
miRNA:   3'- -UGuaACUaGUGAUGCCG---------CUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 57310 0.67 0.974436
Target:  5'- gACAUU-AUCACUcuaaaagucaacaACGGUcucGAUGAUGGCg -3'
miRNA:   3'- -UGUAAcUAGUGA-------------UGCCG---CUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 58835 0.66 0.991411
Target:  5'- gUAUUGAUCAagaUGauGCcgacuGCGACGGCg -3'
miRNA:   3'- uGUAACUAGUg--AUgcCGc----UGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 59511 0.66 0.987297
Target:  5'- aGCGgcGA-CGCgACGGCGGCaACGGUu -3'
miRNA:   3'- -UGUaaCUaGUGaUGCCGCUGcUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 60185 0.76 0.647909
Target:  5'- aGCGgcGAUagaagagGCaGCGGCGGCGGCGGCg -3'
miRNA:   3'- -UGUaaCUAg------UGaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 62040 1.13 0.00428
Target:  5'- gACAUUGAUCACUACGGCGACGACGGCa -3'
miRNA:   3'- -UGUAACUAGUGAUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 63845 0.68 0.962347
Target:  5'- -aAUUGAUCAagcGCGGCGuCGACGu- -3'
miRNA:   3'- ugUAACUAGUga-UGCCGCuGCUGCcg -5'
11666 3' -51.5 NC_003102.1 + 66752 0.75 0.689777
Target:  5'- gACGaUGAcgACUGCGGCGGCGACGa- -3'
miRNA:   3'- -UGUaACUagUGAUGCCGCUGCUGCcg -5'
11666 3' -51.5 NC_003102.1 + 71912 0.73 0.789501
Target:  5'- aGCAgcgUGGUCGCcguCGGCGACaaggacaGCGGCa -3'
miRNA:   3'- -UGUa--ACUAGUGau-GCCGCUGc------UGCCG- -5'
11666 3' -51.5 NC_003102.1 + 72718 0.74 0.730832
Target:  5'- aACggUGGUgGaaaugguaGCGGCGGCGGCGGCa -3'
miRNA:   3'- -UGuaACUAgUga------UGCCGCUGCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.