miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11666 3' -51.5 NC_003102.1 + 90049 0.71 0.88884
Target:  5'- ---aUGAcaUC-CUGucUGGCGGCGGCGGCg -3'
miRNA:   3'- uguaACU--AGuGAU--GCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 87975 0.66 0.985632
Target:  5'- cGCAgucAUCACgguagaaGGCGcaGCGGCGGCu -3'
miRNA:   3'- -UGUaacUAGUGaug----CCGC--UGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 87438 0.76 0.647909
Target:  5'- ----cGAUCGacguCGGCGACGGCGGUg -3'
miRNA:   3'- uguaaCUAGUgau-GCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 81252 0.73 0.77044
Target:  5'- cGCGU---UUugUACGGCGACaACGGCa -3'
miRNA:   3'- -UGUAacuAGugAUGCCGCUGcUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 78440 0.84 0.282712
Target:  5'- ----aGAUgACgGCGGCGACGACGGCg -3'
miRNA:   3'- uguaaCUAgUGaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 74057 0.72 0.851014
Target:  5'- cGCAaaugGAUUuuugGCUAgaGGCGACGACGGUu -3'
miRNA:   3'- -UGUaa--CUAG----UGAUg-CCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 73583 0.67 0.971938
Target:  5'- ----cGAUCACguugAUGGCGuacgcucCGAUGGCu -3'
miRNA:   3'- uguaaCUAGUGa---UGCCGCu------GCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 72718 0.74 0.730832
Target:  5'- aACggUGGUgGaaaugguaGCGGCGGCGGCGGCa -3'
miRNA:   3'- -UGuaACUAgUga------UGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 71912 0.73 0.789501
Target:  5'- aGCAgcgUGGUCGCcguCGGCGACaaggacaGCGGCa -3'
miRNA:   3'- -UGUa--ACUAGUGau-GCCGCUGc------UGCCG- -5'
11666 3' -51.5 NC_003102.1 + 66752 0.75 0.689777
Target:  5'- gACGaUGAcgACUGCGGCGGCGACGa- -3'
miRNA:   3'- -UGUaACUagUGAUGCCGCUGCUGCcg -5'
11666 3' -51.5 NC_003102.1 + 63845 0.68 0.962347
Target:  5'- -aAUUGAUCAagcGCGGCGuCGACGu- -3'
miRNA:   3'- ugUAACUAGUga-UGCCGCuGCUGCcg -5'
11666 3' -51.5 NC_003102.1 + 62040 1.13 0.00428
Target:  5'- gACAUUGAUCACUACGGCGACGACGGCa -3'
miRNA:   3'- -UGUAACUAGUGAUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 60185 0.76 0.647909
Target:  5'- aGCGgcGAUagaagagGCaGCGGCGGCGGCGGCg -3'
miRNA:   3'- -UGUaaCUAg------UGaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 59511 0.66 0.987297
Target:  5'- aGCGgcGA-CGCgACGGCGGCaACGGUu -3'
miRNA:   3'- -UGUaaCUaGUGaUGCCGCUGcUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 58835 0.66 0.991411
Target:  5'- gUAUUGAUCAagaUGauGCcgacuGCGACGGCg -3'
miRNA:   3'- uGUAACUAGUg--AUgcCGc----UGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 57310 0.67 0.974436
Target:  5'- gACAUU-AUCACUcuaaaagucaacaACGGUcucGAUGAUGGCg -3'
miRNA:   3'- -UGUAAcUAGUGA-------------UGCCG---CUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 57067 0.76 0.647909
Target:  5'- gACggUGAcCACUAUGGUggaggcggaGGCGACGGCa -3'
miRNA:   3'- -UGuaACUaGUGAUGCCG---------CUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 49019 0.82 0.357489
Target:  5'- cGCAUUcaagcGA-CGCgGCGGCGGCGACGGCg -3'
miRNA:   3'- -UGUAA-----CUaGUGaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 48346 0.66 0.990177
Target:  5'- gGCAaUGAUgACUACGugagaacCGAUGACGuGCu -3'
miRNA:   3'- -UGUaACUAgUGAUGCc------GCUGCUGC-CG- -5'
11666 3' -51.5 NC_003102.1 + 46578 0.66 0.987297
Target:  5'- ---gUGAUCAaaacauuugACGaaGACGACGGCa -3'
miRNA:   3'- uguaACUAGUga-------UGCcgCUGCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.