miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11666 3' -51.5 NC_003102.1 + 135873 0.69 0.93733
Target:  5'- aACuguUUGAaaaguaUCACgguaauucaauuucUGGCGACGACGGCg -3'
miRNA:   3'- -UGu--AACU------AGUGau------------GCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 135081 0.7 0.902332
Target:  5'- ----aGAUUGgagAgGGCGACGACGGCg -3'
miRNA:   3'- uguaaCUAGUga-UgCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 134369 0.75 0.710446
Target:  5'- ---gUGua-GCgGCGGCGGCGGCGGCg -3'
miRNA:   3'- uguaACuagUGaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 133908 0.73 0.807963
Target:  5'- uGCGgcGA-CACUACGGCGGCugcgacGCGGCc -3'
miRNA:   3'- -UGUaaCUaGUGAUGCCGCUGc-----UGCCG- -5'
11666 3' -51.5 NC_003102.1 + 131833 0.66 0.987297
Target:  5'- ----cGAUCAUUugauggaaucgACaGGCGACG-CGGCa -3'
miRNA:   3'- uguaaCUAGUGA-----------UG-CCGCUGCuGCCG- -5'
11666 3' -51.5 NC_003102.1 + 130511 0.7 0.90871
Target:  5'- aACAUUGAUauuuGCaagACGGCGAgGAaaaCGGCu -3'
miRNA:   3'- -UGUAACUAg---UGa--UGCCGCUgCU---GCCG- -5'
11666 3' -51.5 NC_003102.1 + 128713 0.69 0.946316
Target:  5'- ---cUGAgCGCgUAUaGCGGCGACGGCg -3'
miRNA:   3'- uguaACUaGUG-AUGcCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 127450 0.66 0.98437
Target:  5'- uACAUUGAaaauaaucgcaUCACggaugugcacguaaaGGCGAccaaCGACGGCg -3'
miRNA:   3'- -UGUAACU-----------AGUGaug------------CCGCU----GCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 121095 0.69 0.95026
Target:  5'- ----cGGUCGCUcguugauguCGGCGACGacgccguGCGGCa -3'
miRNA:   3'- uguaaCUAGUGAu--------GCCGCUGC-------UGCCG- -5'
11666 3' -51.5 NC_003102.1 + 119309 0.75 0.700142
Target:  5'- cACAUUGGcCGCaaACGGCGGCGcCGGUg -3'
miRNA:   3'- -UGUAACUaGUGa-UGCCGCUGCuGCCG- -5'
11666 3' -51.5 NC_003102.1 + 119188 0.66 0.991411
Target:  5'- cCAggGAUCG-UACGGCGucuCGcACGGUu -3'
miRNA:   3'- uGUaaCUAGUgAUGCCGCu--GC-UGCCG- -5'
11666 3' -51.5 NC_003102.1 + 118308 0.68 0.962347
Target:  5'- cACAUguuugGAUaguagACgggAUGGCGuGCGACGGCg -3'
miRNA:   3'- -UGUAa----CUAg----UGa--UGCCGC-UGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 117573 0.66 0.990177
Target:  5'- gACGUUGuuggcgacguccAUCACUAUcucgaucaauaGGCGAgcguCGACGGUc -3'
miRNA:   3'- -UGUAAC------------UAGUGAUG-----------CCGCU----GCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 114957 0.66 0.991411
Target:  5'- uACGauaGUCACgGCGGUGuccaaaggcaACGGCGGCg -3'
miRNA:   3'- -UGUaacUAGUGaUGCCGC----------UGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 114950 0.67 0.979629
Target:  5'- ----cGGUCACauUGGCGGucaaGACGGCa -3'
miRNA:   3'- uguaaCUAGUGauGCCGCUg---CUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 113006 0.66 0.988809
Target:  5'- gGCggUGGUgGuguCGGCGGUGGCGGCa -3'
miRNA:   3'- -UGuaACUAgUgauGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 111588 0.75 0.700142
Target:  5'- aGCGgagGAg----GCGGCGGCGGCGGCg -3'
miRNA:   3'- -UGUaa-CUagugaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 105503 0.76 0.637386
Target:  5'- ----cGAUaACaGCGGCGACGACGGUg -3'
miRNA:   3'- uguaaCUAgUGaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 102047 0.68 0.965766
Target:  5'- uCAUcGaAUCGaaGCGGCGGCGGUGGCg -3'
miRNA:   3'- uGUAaC-UAGUgaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 100150 0.74 0.740895
Target:  5'- uCGUUGGUCGCaucgUGGuCGGCGACGGUc -3'
miRNA:   3'- uGUAACUAGUGau--GCC-GCUGCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.