miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11666 3' -51.5 NC_003102.1 + 23766 0.68 0.962347
Target:  5'- gACAUUaGA-UugUACGuGuCGAUGGCGGCa -3'
miRNA:   3'- -UGUAA-CUaGugAUGC-C-GCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 74057 0.72 0.851014
Target:  5'- cGCAaaugGAUUuuugGCUAgaGGCGACGACGGUu -3'
miRNA:   3'- -UGUaa--CUAG----UGAUg-CCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 135081 0.7 0.902332
Target:  5'- ----aGAUUGgagAgGGCGACGACGGCg -3'
miRNA:   3'- uguaaCUAGUga-UgCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 19483 0.7 0.90871
Target:  5'- aACAUUGAUUgucCgggugGCGGCGACGACa-- -3'
miRNA:   3'- -UGUAACUAGu--Ga----UGCCGCUGCUGccg -5'
11666 3' -51.5 NC_003102.1 + 130511 0.7 0.90871
Target:  5'- aACAUUGAUauuuGCaagACGGCGAgGAaaaCGGCu -3'
miRNA:   3'- -UGUAACUAg---UGa--UGCCGCUgCU---GCCG- -5'
11666 3' -51.5 NC_003102.1 + 128713 0.69 0.946316
Target:  5'- ---cUGAgCGCgUAUaGCGGCGACGGCg -3'
miRNA:   3'- uguaACUaGUG-AUGcCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 121095 0.69 0.95026
Target:  5'- ----cGGUCGCUcguugauguCGGCGACGacgccguGCGGCa -3'
miRNA:   3'- uguaaCUAGUGAu--------GCCGCUGC-------UGCCG- -5'
11666 3' -51.5 NC_003102.1 + 6639 0.68 0.954812
Target:  5'- gGCGUUGGU-GCUGCugauggugcuGGUGACGuuGGCg -3'
miRNA:   3'- -UGUAACUAgUGAUG----------CCGCUGCugCCG- -5'
11666 3' -51.5 NC_003102.1 + 118308 0.68 0.962347
Target:  5'- cACAUguuugGAUaguagACgggAUGGCGuGCGACGGCg -3'
miRNA:   3'- -UGUAa----CUAg----UGa--UGCCGC-UGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 81252 0.73 0.77044
Target:  5'- cGCGU---UUugUACGGCGACaACGGCa -3'
miRNA:   3'- -UGUAacuAGugAUGCCGCUGcUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 16431 0.74 0.74788
Target:  5'- -gGUUGAUCGCcGCGauucugccgcagucGCGGCGGCGGUc -3'
miRNA:   3'- ugUAACUAGUGaUGC--------------CGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 134369 0.75 0.710446
Target:  5'- ---gUGua-GCgGCGGCGGCGGCGGCg -3'
miRNA:   3'- uguaACuagUGaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 33092 0.81 0.391053
Target:  5'- ----cGAUC-CUGuCGGCGGCGGCGGCg -3'
miRNA:   3'- uguaaCUAGuGAU-GCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 17725 0.78 0.513039
Target:  5'- ----aGAagGCgGCGGCGGCGGCGGCg -3'
miRNA:   3'- uguaaCUagUGaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 60185 0.76 0.647909
Target:  5'- aGCGgcGAUagaagagGCaGCGGCGGCGGCGGCg -3'
miRNA:   3'- -UGUaaCUAg------UGaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 87438 0.76 0.647909
Target:  5'- ----cGAUCGacguCGGCGACGGCGGUg -3'
miRNA:   3'- uguaaCUAGUgau-GCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 66752 0.75 0.689777
Target:  5'- gACGaUGAcgACUGCGGCGGCGACGa- -3'
miRNA:   3'- -UGUaACUagUGAUGCCGCUGCUGCcg -5'
11666 3' -51.5 NC_003102.1 + 119309 0.75 0.700142
Target:  5'- cACAUUGGcCGCaaACGGCGGCGcCGGUg -3'
miRNA:   3'- -UGUAACUaGUGa-UGCCGCUGCuGCCG- -5'
11666 3' -51.5 NC_003102.1 + 45847 0.75 0.700142
Target:  5'- aGCGgcGAUagaagagGCaGCGGCGGCGGCGGCu -3'
miRNA:   3'- -UGUaaCUAg------UGaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 32381 0.75 0.710446
Target:  5'- uACGUUuucccGAUCgguuuucagacgGCUGCGGCuGCGGCGGCa -3'
miRNA:   3'- -UGUAA-----CUAG------------UGAUGCCGcUGCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.