Results 21 - 40 of 67 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11666 | 3' | -51.5 | NC_003102.1 | + | 78440 | 0.84 | 0.282712 |
Target: 5'- ----aGAUgACgGCGGCGACGACGGCg -3' miRNA: 3'- uguaaCUAgUGaUGCCGCUGCUGCCG- -5' |
|||||||
11666 | 3' | -51.5 | NC_003102.1 | + | 33092 | 0.81 | 0.391053 |
Target: 5'- ----cGAUC-CUGuCGGCGGCGGCGGCg -3' miRNA: 3'- uguaaCUAGuGAU-GCCGCUGCUGCCG- -5' |
|||||||
11666 | 3' | -51.5 | NC_003102.1 | + | 17725 | 0.78 | 0.513039 |
Target: 5'- ----aGAagGCgGCGGCGGCGGCGGCg -3' miRNA: 3'- uguaaCUagUGaUGCCGCUGCUGCCG- -5' |
|||||||
11666 | 3' | -51.5 | NC_003102.1 | + | 60185 | 0.76 | 0.647909 |
Target: 5'- aGCGgcGAUagaagagGCaGCGGCGGCGGCGGCg -3' miRNA: 3'- -UGUaaCUAg------UGaUGCCGCUGCUGCCG- -5' |
|||||||
11666 | 3' | -51.5 | NC_003102.1 | + | 87438 | 0.76 | 0.647909 |
Target: 5'- ----cGAUCGacguCGGCGACGGCGGUg -3' miRNA: 3'- uguaaCUAGUgau-GCCGCUGCUGCCG- -5' |
|||||||
11666 | 3' | -51.5 | NC_003102.1 | + | 66752 | 0.75 | 0.689777 |
Target: 5'- gACGaUGAcgACUGCGGCGGCGACGa- -3' miRNA: 3'- -UGUaACUagUGAUGCCGCUGCUGCcg -5' |
|||||||
11666 | 3' | -51.5 | NC_003102.1 | + | 119309 | 0.75 | 0.700142 |
Target: 5'- cACAUUGGcCGCaaACGGCGGCGcCGGUg -3' miRNA: 3'- -UGUAACUaGUGa-UGCCGCUGCuGCCG- -5' |
|||||||
11666 | 3' | -51.5 | NC_003102.1 | + | 45847 | 0.75 | 0.700142 |
Target: 5'- aGCGgcGAUagaagagGCaGCGGCGGCGGCGGCu -3' miRNA: 3'- -UGUaaCUAg------UGaUGCCGCUGCUGCCG- -5' |
|||||||
11666 | 3' | -51.5 | NC_003102.1 | + | 32381 | 0.75 | 0.710446 |
Target: 5'- uACGUUuucccGAUCgguuuucagacgGCUGCGGCuGCGGCGGCa -3' miRNA: 3'- -UGUAA-----CUAG------------UGAUGCCGcUGCUGCCG- -5' |
|||||||
11666 | 3' | -51.5 | NC_003102.1 | + | 134369 | 0.75 | 0.710446 |
Target: 5'- ---gUGua-GCgGCGGCGGCGGCGGCg -3' miRNA: 3'- uguaACuagUGaUGCCGCUGCUGCCG- -5' |
|||||||
11666 | 3' | -51.5 | NC_003102.1 | + | 128713 | 0.69 | 0.946316 |
Target: 5'- ---cUGAgCGCgUAUaGCGGCGACGGCg -3' miRNA: 3'- uguaACUaGUG-AUGcCGCUGCUGCCG- -5' |
|||||||
11666 | 3' | -51.5 | NC_003102.1 | + | 130511 | 0.7 | 0.90871 |
Target: 5'- aACAUUGAUauuuGCaagACGGCGAgGAaaaCGGCu -3' miRNA: 3'- -UGUAACUAg---UGa--UGCCGCUgCU---GCCG- -5' |
|||||||
11666 | 3' | -51.5 | NC_003102.1 | + | 19483 | 0.7 | 0.90871 |
Target: 5'- aACAUUGAUUgucCgggugGCGGCGACGACa-- -3' miRNA: 3'- -UGUAACUAGu--Ga----UGCCGCUGCUGccg -5' |
|||||||
11666 | 3' | -51.5 | NC_003102.1 | + | 135081 | 0.7 | 0.902332 |
Target: 5'- ----aGAUUGgagAgGGCGACGACGGCg -3' miRNA: 3'- uguaaCUAGUga-UgCCGCUGCUGCCG- -5' |
|||||||
11666 | 3' | -51.5 | NC_003102.1 | + | 74057 | 0.72 | 0.851014 |
Target: 5'- cGCAaaugGAUUuuugGCUAgaGGCGACGACGGUu -3' miRNA: 3'- -UGUaa--CUAG----UGAUg-CCGCUGCUGCCG- -5' |
|||||||
11666 | 3' | -51.5 | NC_003102.1 | + | 81252 | 0.73 | 0.77044 |
Target: 5'- cGCGU---UUugUACGGCGACaACGGCa -3' miRNA: 3'- -UGUAacuAGugAUGCCGCUGcUGCCG- -5' |
|||||||
11666 | 3' | -51.5 | NC_003102.1 | + | 16431 | 0.74 | 0.74788 |
Target: 5'- -gGUUGAUCGCcGCGauucugccgcagucGCGGCGGCGGUc -3' miRNA: 3'- ugUAACUAGUGaUGC--------------CGCUGCUGCCG- -5' |
|||||||
11666 | 3' | -51.5 | NC_003102.1 | + | 62040 | 1.13 | 0.00428 |
Target: 5'- gACAUUGAUCACUACGGCGACGACGGCa -3' miRNA: 3'- -UGUAACUAGUGAUGCCGCUGCUGCCG- -5' |
|||||||
11666 | 3' | -51.5 | NC_003102.1 | + | 18377 | 0.66 | 0.990177 |
Target: 5'- aGCA-UGAUCuugGCGGuCGcguuccaaaACGGCGGCg -3' miRNA: 3'- -UGUaACUAGugaUGCC-GC---------UGCUGCCG- -5' |
|||||||
11666 | 3' | -51.5 | NC_003102.1 | + | 13237 | 0.66 | 0.990177 |
Target: 5'- -aGUUGAUguCUACGGCGA-GACcGUu -3' miRNA: 3'- ugUAACUAguGAUGCCGCUgCUGcCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home