Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11666 | 3' | -51.5 | NC_003102.1 | + | 57067 | 0.76 | 0.647909 |
Target: 5'- gACggUGAcCACUAUGGUggaggcggaGGCGACGGCa -3' miRNA: 3'- -UGuaACUaGUGAUGCCG---------CUGCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 38920 | 0.72 | 0.851014 |
Target: 5'- ---gUGGUCAaaagcgGCGGCGACGACGa- -3' miRNA: 3'- uguaACUAGUga----UGCCGCUGCUGCcg -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 87975 | 0.66 | 0.985632 |
Target: 5'- cGCAgucAUCACgguagaaGGCGcaGCGGCGGCu -3' miRNA: 3'- -UGUaacUAGUGaug----CCGC--UGCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 100150 | 0.74 | 0.740895 |
Target: 5'- uCGUUGGUCGCaucgUGGuCGGCGACGGUc -3' miRNA: 3'- uGUAACUAGUGau--GCC-GCUGCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 49019 | 0.82 | 0.357489 |
Target: 5'- cGCAUUcaagcGA-CGCgGCGGCGGCGACGGCg -3' miRNA: 3'- -UGUAA-----CUaGUGaUGCCGCUGCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 105503 | 0.76 | 0.637386 |
Target: 5'- ----cGAUaACaGCGGCGACGACGGUg -3' miRNA: 3'- uguaaCUAgUGaUGCCGCUGCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 17484 | 0.66 | 0.987297 |
Target: 5'- ----aGAUCGCguCGGCGGguauguCGAUGGCg -3' miRNA: 3'- uguaaCUAGUGauGCCGCU------GCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 59511 | 0.66 | 0.987297 |
Target: 5'- aGCGgcGA-CGCgACGGCGGCaACGGUu -3' miRNA: 3'- -UGUaaCUaGUGaUGCCGCUGcUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 114950 | 0.67 | 0.979629 |
Target: 5'- ----cGGUCACauUGGCGGucaaGACGGCa -3' miRNA: 3'- uguaaCUAGUGauGCCGCUg---CUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 37874 | 0.73 | 0.807963 |
Target: 5'- --------gGCgGCGGCGGCGGCGGCg -3' miRNA: 3'- uguaacuagUGaUGCCGCUGCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 119309 | 0.75 | 0.700142 |
Target: 5'- cACAUUGGcCGCaaACGGCGGCGcCGGUg -3' miRNA: 3'- -UGUAACUaGUGa-UGCCGCUGCuGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 113006 | 0.66 | 0.988809 |
Target: 5'- gGCggUGGUgGuguCGGCGGUGGCGGCa -3' miRNA: 3'- -UGuaACUAgUgauGCCGCUGCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 19483 | 0.7 | 0.90871 |
Target: 5'- aACAUUGAUUgucCgggugGCGGCGACGACa-- -3' miRNA: 3'- -UGUAACUAGu--Ga----UGCCGCUGCUGccg -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 135081 | 0.7 | 0.902332 |
Target: 5'- ----aGAUUGgagAgGGCGACGACGGCg -3' miRNA: 3'- uguaaCUAGUga-UgCCGCUGCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 74057 | 0.72 | 0.851014 |
Target: 5'- cGCAaaugGAUUuuugGCUAgaGGCGACGACGGUu -3' miRNA: 3'- -UGUaa--CUAG----UGAUg-CCGCUGCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 17747 | 0.66 | 0.985632 |
Target: 5'- -----------gGCGGCGGCGGCGGUg -3' miRNA: 3'- uguaacuagugaUGCCGCUGCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 36533 | 0.66 | 0.987297 |
Target: 5'- aACAUUGGaUACcggACGGcCGACGGauCGGUg -3' miRNA: 3'- -UGUAACUaGUGa--UGCC-GCUGCU--GCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 46578 | 0.66 | 0.987297 |
Target: 5'- ---gUGAUCAaaacauuugACGaaGACGACGGCa -3' miRNA: 3'- uguaACUAGUga-------UGCcgCUGCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 131833 | 0.66 | 0.987297 |
Target: 5'- ----cGAUCAUUugauggaaucgACaGGCGACG-CGGCa -3' miRNA: 3'- uguaaCUAGUGA-----------UG-CCGCUGCuGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 10791 | 0.66 | 0.988809 |
Target: 5'- ---aUGAguucCACUACGGCGccCGAUGcGCu -3' miRNA: 3'- uguaACUa---GUGAUGCCGCu-GCUGC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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