miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11666 3' -51.5 NC_003102.1 + 58835 0.66 0.991411
Target:  5'- gUAUUGAUCAagaUGauGCcgacuGCGACGGCg -3'
miRNA:   3'- uGUAACUAGUg--AUgcCGc----UGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 46158 0.7 0.90871
Target:  5'- gGCAaUG-UCGuugAUGGCGGCGGCGGUg -3'
miRNA:   3'- -UGUaACuAGUga-UGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 38920 0.72 0.851014
Target:  5'- ---gUGGUCAaaagcgGCGGCGACGACGa- -3'
miRNA:   3'- uguaACUAGUga----UGCCGCUGCUGCcg -5'
11666 3' -51.5 NC_003102.1 + 62040 1.13 0.00428
Target:  5'- gACAUUGAUCACUACGGCGACGACGGCa -3'
miRNA:   3'- -UGUAACUAGUGAUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 59511 0.66 0.987297
Target:  5'- aGCGgcGA-CGCgACGGCGGCaACGGUu -3'
miRNA:   3'- -UGUaaCUaGUGaUGCCGCUGcUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 17484 0.66 0.987297
Target:  5'- ----aGAUCGCguCGGCGGguauguCGAUGGCg -3'
miRNA:   3'- uguaaCUAGUGauGCCGCU------GCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 127450 0.66 0.98437
Target:  5'- uACAUUGAaaauaaucgcaUCACggaugugcacguaaaGGCGAccaaCGACGGCg -3'
miRNA:   3'- -UGUAACU-----------AGUGaug------------CCGCU----GCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 114950 0.67 0.979629
Target:  5'- ----cGGUCACauUGGCGGucaaGACGGCa -3'
miRNA:   3'- uguaaCUAGUGauGCCGCUg---CUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 19727 0.67 0.971938
Target:  5'- uACGUaaUGA-CAU--CGGCGuCGGCGGCg -3'
miRNA:   3'- -UGUA--ACUaGUGauGCCGCuGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 21453 0.69 0.931713
Target:  5'- ----cGAUCGgU-CGGCGGCGAUGcGCg -3'
miRNA:   3'- uguaaCUAGUgAuGCCGCUGCUGC-CG- -5'
11666 3' -51.5 NC_003102.1 + 102047 0.68 0.965766
Target:  5'- uCAUcGaAUCGaaGCGGCGGCGGUGGCg -3'
miRNA:   3'- uGUAaC-UAGUgaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 57310 0.67 0.974436
Target:  5'- gACAUU-AUCACUcuaaaagucaacaACGGUcucGAUGAUGGCg -3'
miRNA:   3'- -UGUAAcUAGUGA-------------UGCCG---CUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 18377 0.66 0.990177
Target:  5'- aGCA-UGAUCuugGCGGuCGcguuccaaaACGGCGGCg -3'
miRNA:   3'- -UGUaACUAGugaUGCC-GC---------UGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 63845 0.68 0.962347
Target:  5'- -aAUUGAUCAagcGCGGCGuCGACGu- -3'
miRNA:   3'- ugUAACUAGUga-UGCCGCuGCUGCcg -5'
11666 3' -51.5 NC_003102.1 + 13237 0.66 0.990177
Target:  5'- -aGUUGAUguCUACGGCGA-GACcGUu -3'
miRNA:   3'- ugUAACUAguGAUGCCGCUgCUGcCG- -5'
11666 3' -51.5 NC_003102.1 + 41610 0.67 0.977264
Target:  5'- gGCAagGGcgcuaauccuUCGCU-CGGCGACGAaaacguugaCGGCg -3'
miRNA:   3'- -UGUaaCU----------AGUGAuGCCGCUGCU---------GCCG- -5'
11666 3' -51.5 NC_003102.1 + 135873 0.69 0.93733
Target:  5'- aACuguUUGAaaaguaUCACgguaauucaauuucUGGCGACGACGGCg -3'
miRNA:   3'- -UGu--AACU------AGUGau------------GCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 90049 0.71 0.88884
Target:  5'- ---aUGAcaUC-CUGucUGGCGGCGGCGGCg -3'
miRNA:   3'- uguaACU--AGuGAU--GCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 42374 0.66 0.988809
Target:  5'- ----aGAUCAgCUggaacguguggaACGGCGGCGGaGGCg -3'
miRNA:   3'- uguaaCUAGU-GA------------UGCCGCUGCUgCCG- -5'
11666 3' -51.5 NC_003102.1 + 87975 0.66 0.985632
Target:  5'- cGCAgucAUCACgguagaaGGCGcaGCGGCGGCu -3'
miRNA:   3'- -UGUaacUAGUGaug----CCGC--UGCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.