miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11666 3' -51.5 NC_003102.1 + 73583 0.67 0.971938
Target:  5'- ----cGAUCACguugAUGGCGuacgcucCGAUGGCu -3'
miRNA:   3'- uguaaCUAGUGa---UGCCGCu------GCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 74057 0.72 0.851014
Target:  5'- cGCAaaugGAUUuuugGCUAgaGGCGACGACGGUu -3'
miRNA:   3'- -UGUaa--CUAG----UGAUg-CCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 78440 0.84 0.282712
Target:  5'- ----aGAUgACgGCGGCGACGACGGCg -3'
miRNA:   3'- uguaaCUAgUGaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 81252 0.73 0.77044
Target:  5'- cGCGU---UUugUACGGCGACaACGGCa -3'
miRNA:   3'- -UGUAacuAGugAUGCCGCUGcUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 87438 0.76 0.647909
Target:  5'- ----cGAUCGacguCGGCGACGGCGGUg -3'
miRNA:   3'- uguaaCUAGUgau-GCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 87975 0.66 0.985632
Target:  5'- cGCAgucAUCACgguagaaGGCGcaGCGGCGGCu -3'
miRNA:   3'- -UGUaacUAGUGaug----CCGC--UGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 90049 0.71 0.88884
Target:  5'- ---aUGAcaUC-CUGucUGGCGGCGGCGGCg -3'
miRNA:   3'- uguaACU--AGuGAU--GCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 100150 0.74 0.740895
Target:  5'- uCGUUGGUCGCaucgUGGuCGGCGACGGUc -3'
miRNA:   3'- uGUAACUAGUGau--GCC-GCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 102047 0.68 0.965766
Target:  5'- uCAUcGaAUCGaaGCGGCGGCGGUGGCg -3'
miRNA:   3'- uGUAaC-UAGUgaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 105503 0.76 0.637386
Target:  5'- ----cGAUaACaGCGGCGACGACGGUg -3'
miRNA:   3'- uguaaCUAgUGaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 111588 0.75 0.700142
Target:  5'- aGCGgagGAg----GCGGCGGCGGCGGCg -3'
miRNA:   3'- -UGUaa-CUagugaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 113006 0.66 0.988809
Target:  5'- gGCggUGGUgGuguCGGCGGUGGCGGCa -3'
miRNA:   3'- -UGuaACUAgUgauGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 114950 0.67 0.979629
Target:  5'- ----cGGUCACauUGGCGGucaaGACGGCa -3'
miRNA:   3'- uguaaCUAGUGauGCCGCUg---CUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 114957 0.66 0.991411
Target:  5'- uACGauaGUCACgGCGGUGuccaaaggcaACGGCGGCg -3'
miRNA:   3'- -UGUaacUAGUGaUGCCGC----------UGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 117573 0.66 0.990177
Target:  5'- gACGUUGuuggcgacguccAUCACUAUcucgaucaauaGGCGAgcguCGACGGUc -3'
miRNA:   3'- -UGUAAC------------UAGUGAUG-----------CCGCU----GCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 118308 0.68 0.962347
Target:  5'- cACAUguuugGAUaguagACgggAUGGCGuGCGACGGCg -3'
miRNA:   3'- -UGUAa----CUAg----UGa--UGCCGC-UGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 119188 0.66 0.991411
Target:  5'- cCAggGAUCG-UACGGCGucuCGcACGGUu -3'
miRNA:   3'- uGUaaCUAGUgAUGCCGCu--GC-UGCCG- -5'
11666 3' -51.5 NC_003102.1 + 119309 0.75 0.700142
Target:  5'- cACAUUGGcCGCaaACGGCGGCGcCGGUg -3'
miRNA:   3'- -UGUAACUaGUGa-UGCCGCUGCuGCCG- -5'
11666 3' -51.5 NC_003102.1 + 121095 0.69 0.95026
Target:  5'- ----cGGUCGCUcguugauguCGGCGACGacgccguGCGGCa -3'
miRNA:   3'- uguaaCUAGUGAu--------GCCGCUGC-------UGCCG- -5'
11666 3' -51.5 NC_003102.1 + 127450 0.66 0.98437
Target:  5'- uACAUUGAaaauaaucgcaUCACggaugugcacguaaaGGCGAccaaCGACGGCg -3'
miRNA:   3'- -UGUAACU-----------AGUGaug------------CCGCU----GCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.