Results 61 - 67 of 67 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11666 | 3' | -51.5 | NC_003102.1 | + | 128713 | 0.69 | 0.946316 |
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Target: 5'- ---cUGAgCGCgUAUaGCGGCGACGGCg -3' miRNA: 3'- uguaACUaGUG-AUGcCGCUGCUGCCG- -5' |
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| 11666 | 3' | -51.5 | NC_003102.1 | + | 130511 | 0.7 | 0.90871 |
|
Target: 5'- aACAUUGAUauuuGCaagACGGCGAgGAaaaCGGCu -3' miRNA: 3'- -UGUAACUAg---UGa--UGCCGCUgCU---GCCG- -5' |
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| 11666 | 3' | -51.5 | NC_003102.1 | + | 131833 | 0.66 | 0.987297 |
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Target: 5'- ----cGAUCAUUugauggaaucgACaGGCGACG-CGGCa -3' miRNA: 3'- uguaaCUAGUGA-----------UG-CCGCUGCuGCCG- -5' |
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| 11666 | 3' | -51.5 | NC_003102.1 | + | 133908 | 0.73 | 0.807963 |
|
Target: 5'- uGCGgcGA-CACUACGGCGGCugcgacGCGGCc -3' miRNA: 3'- -UGUaaCUaGUGAUGCCGCUGc-----UGCCG- -5' |
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| 11666 | 3' | -51.5 | NC_003102.1 | + | 134369 | 0.75 | 0.710446 |
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Target: 5'- ---gUGua-GCgGCGGCGGCGGCGGCg -3' miRNA: 3'- uguaACuagUGaUGCCGCUGCUGCCG- -5' |
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| 11666 | 3' | -51.5 | NC_003102.1 | + | 135081 | 0.7 | 0.902332 |
|
Target: 5'- ----aGAUUGgagAgGGCGACGACGGCg -3' miRNA: 3'- uguaaCUAGUga-UgCCGCUGCUGCCG- -5' |
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| 11666 | 3' | -51.5 | NC_003102.1 | + | 135873 | 0.69 | 0.93733 |
|
Target: 5'- aACuguUUGAaaaguaUCACgguaauucaauuucUGGCGACGACGGCg -3' miRNA: 3'- -UGu--AACU------AGUGau------------GCCGCUGCUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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