miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11669 3' -54.9 NC_003102.1 + 85907 0.67 0.915132
Target:  5'- aAACaGggCGUGcCCGaCGUUCGCGCCa -3'
miRNA:   3'- gUUGgCuaGUGCaGGC-GCAAGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 53789 0.68 0.883174
Target:  5'- aCGGCCGAg-ACGUgaGCaacGUUCGCGCUu -3'
miRNA:   3'- -GUUGGCUagUGCAggCG---CAAGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 109030 0.68 0.876103
Target:  5'- gAGCCGAUCACGUuuGag--C-CGCCu -3'
miRNA:   3'- gUUGGCUAGUGCAggCgcaaGcGCGG- -5'
11669 3' -54.9 NC_003102.1 + 41039 0.68 0.861315
Target:  5'- --cCUGGUCACGUUCGacgacgcgagauCGgugCGCGCCa -3'
miRNA:   3'- guuGGCUAGUGCAGGC------------GCaa-GCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 128763 0.69 0.844903
Target:  5'- aUAGCCGGUCucgagacGCGUCUGUcuagCGCGCUc -3'
miRNA:   3'- -GUUGGCUAG-------UGCAGGCGcaa-GCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 63250 0.7 0.803432
Target:  5'- aCGAUCGAUCugGaCCGUGc-CGcCGCCg -3'
miRNA:   3'- -GUUGGCUAGugCaGGCGCaaGC-GCGG- -5'
11669 3' -54.9 NC_003102.1 + 27682 0.71 0.728246
Target:  5'- uGAUCGAUCGCGUCCaacCGaUCG-GCCa -3'
miRNA:   3'- gUUGGCUAGUGCAGGc--GCaAGCgCGG- -5'
11669 3' -54.9 NC_003102.1 + 95735 0.71 0.718381
Target:  5'- gGGCCGAagACGgCCGCa-UCGUGCCg -3'
miRNA:   3'- gUUGGCUagUGCaGGCGcaAGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 17399 0.71 0.708442
Target:  5'- aUAGCCGGUCACGUagaagcugccgcCCGUGcuguuuagCGCGUCg -3'
miRNA:   3'- -GUUGGCUAGUGCA------------GGCGCaa------GCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 121124 0.73 0.617146
Target:  5'- -uGCCGGUCGCG-CCGUG-UC-CGCCg -3'
miRNA:   3'- guUGGCUAGUGCaGGCGCaAGcGCGG- -5'
11669 3' -54.9 NC_003102.1 + 27938 0.79 0.333788
Target:  5'- gCAAUCGAUCACGUCCGgCGUgaGCGUa -3'
miRNA:   3'- -GUUGGCUAGUGCAGGC-GCAagCGCGg -5'
11669 3' -54.9 NC_003102.1 + 63685 1.12 0.002597
Target:  5'- aCAACCGAUCACGUCCGCGUUCGCGCCu -3'
miRNA:   3'- -GUUGGCUAGUGCAGGCGCAAGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 22992 0.67 0.900512
Target:  5'- cCGACCGAUCgguauagGCGUUcaggguauggcggaCGCGUUCGUgaugaugcguauGCCg -3'
miRNA:   3'- -GUUGGCUAG-------UGCAG--------------GCGCAAGCG------------CGG- -5'
11669 3' -54.9 NC_003102.1 + 121240 0.67 0.902414
Target:  5'- gCGACCGAUCagaugcagauGCGaUCCGgGcuuuguguccgauUUCGUGCCc -3'
miRNA:   3'- -GUUGGCUAG----------UGC-AGGCgC-------------AAGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 121010 0.67 0.909205
Target:  5'- uCGAuCCGAUCACGg--GCGa--GCGCCa -3'
miRNA:   3'- -GUU-GGCUAGUGCaggCGCaagCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 23608 0.67 0.926277
Target:  5'- aGACCGggCGCGUuuGCcGUuuaccUCGaGCCg -3'
miRNA:   3'- gUUGGCuaGUGCAggCG-CA-----AGCgCGG- -5'
11669 3' -54.9 NC_003102.1 + 61733 0.66 0.931493
Target:  5'- aGAUCGGaCACGUCCGUGaUCGacgaGaCCa -3'
miRNA:   3'- gUUGGCUaGUGCAGGCGCaAGCg---C-GG- -5'
11669 3' -54.9 NC_003102.1 + 36528 0.66 0.931493
Target:  5'- gGGCCGAga--GUCUgcaguGCGUUCGCGgCg -3'
miRNA:   3'- gUUGGCUagugCAGG-----CGCAAGCGCgG- -5'
11669 3' -54.9 NC_003102.1 + 98587 0.66 0.935003
Target:  5'- uGAUCGAUCACGUaauucucuuucaUCGUGUuaucgauuccguugUUGCGCUg -3'
miRNA:   3'- gUUGGCUAGUGCA------------GGCGCA--------------AGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 129278 0.66 0.935984
Target:  5'- gCAGUCGAUCAaauugcaacauuUGUgauuaucuccugaCCGCGUUCGuCGCCg -3'
miRNA:   3'- -GUUGGCUAGU------------GCA-------------GGCGCAAGC-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.