miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11669 3' -54.9 NC_003102.1 + 57907 0.66 0.949992
Target:  5'- -cGCCGAgagGCuaaUCGCGUUCGcCGCCg -3'
miRNA:   3'- guUGGCUag-UGca-GGCGCAAGC-GCGG- -5'
11669 3' -54.9 NC_003102.1 + 8450 0.67 0.926277
Target:  5'- aGGCCGAggUCGCGUCUucCGUUucuucuaaaCGCGCUa -3'
miRNA:   3'- gUUGGCU--AGUGCAGGc-GCAA---------GCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 112233 0.66 0.931493
Target:  5'- uGACCGAUCuCGUCUacacCGUUCGauCCg -3'
miRNA:   3'- gUUGGCUAGuGCAGGc---GCAAGCgcGG- -5'
11669 3' -54.9 NC_003102.1 + 77825 0.66 0.931493
Target:  5'- -uGCUGGUCACGUUuucgaCGCG-UCGCuCCu -3'
miRNA:   3'- guUGGCUAGUGCAG-----GCGCaAGCGcGG- -5'
11669 3' -54.9 NC_003102.1 + 49872 0.66 0.936471
Target:  5'- uGGCCGGUC-CGUCgGCGaggaCGC-CCg -3'
miRNA:   3'- gUUGGCUAGuGCAGgCGCaa--GCGcGG- -5'
11669 3' -54.9 NC_003102.1 + 133520 0.66 0.941213
Target:  5'- aAGCCGaAUCGCugaUCCGCGU---CGCCg -3'
miRNA:   3'- gUUGGC-UAGUGc--AGGCGCAagcGCGG- -5'
11669 3' -54.9 NC_003102.1 + 133728 0.66 0.945719
Target:  5'- -uGuuGAUCGgGgCCGCG-UCGCaGCCg -3'
miRNA:   3'- guUggCUAGUgCaGGCGCaAGCG-CGG- -5'
11669 3' -54.9 NC_003102.1 + 31046 0.66 0.949992
Target:  5'- aAACgUGAUgaACGUCCGCGUucaagauaucgaUCGUGUCc -3'
miRNA:   3'- gUUG-GCUAg-UGCAGGCGCA------------AGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 31815 0.66 0.949992
Target:  5'- gAACCgGAUCACuauucgguucuGUCCGaCGgUCGUGCa -3'
miRNA:   3'- gUUGG-CUAGUG-----------CAGGC-GCaAGCGCGg -5'
11669 3' -54.9 NC_003102.1 + 85907 0.67 0.915132
Target:  5'- aAACaGggCGUGcCCGaCGUUCGCGCCa -3'
miRNA:   3'- gUUGgCuaGUGCaGGC-GCAAGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 117421 0.67 0.915132
Target:  5'- gAAuaGGUCACGUUgGCGgcucUUGUGCCu -3'
miRNA:   3'- gUUggCUAGUGCAGgCGCa---AGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 71349 0.67 0.905536
Target:  5'- aCAGCaccaCGAUCACGcCCGUcaucauguugaacauGUUCGCGUUu -3'
miRNA:   3'- -GUUG----GCUAGUGCaGGCG---------------CAAGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 18470 0.69 0.807849
Target:  5'- gCGAUCaGGUCACGgcucugcagggcgCCGUcgacgauGUUCGCGCCa -3'
miRNA:   3'- -GUUGG-CUAGUGCa------------GGCG-------CAAGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 37754 0.69 0.812227
Target:  5'- -uGCCGcuuUCGuCGUCCuCG-UCGCGCCg -3'
miRNA:   3'- guUGGCu--AGU-GCAGGcGCaAGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 14862 0.69 0.812227
Target:  5'- aAACCGAUCAuuaguuCGUCCGaGUcaucCGCGUCa -3'
miRNA:   3'- gUUGGCUAGU------GCAGGCgCAa---GCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 6659 0.69 0.837607
Target:  5'- -uGCUGGUgACGUUgGCGUUgGCGUUg -3'
miRNA:   3'- guUGGCUAgUGCAGgCGCAAgCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 79574 0.69 0.852828
Target:  5'- gGACCcguaAUCGCGUCCGaaagauaCGUUCGCGaCg -3'
miRNA:   3'- gUUGGc---UAGUGCAGGC-------GCAAGCGCgG- -5'
11669 3' -54.9 NC_003102.1 + 4262 0.68 0.883174
Target:  5'- gGACCGuugcUCGgGUUCGgGUUCGgGCUc -3'
miRNA:   3'- gUUGGCu---AGUgCAGGCgCAAGCgCGG- -5'
11669 3' -54.9 NC_003102.1 + 17193 0.68 0.883174
Target:  5'- gCAGCCuGAUCagcgACGUgCGCGa-CGCGCUa -3'
miRNA:   3'- -GUUGG-CUAG----UGCAgGCGCaaGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 102262 0.67 0.896648
Target:  5'- uCGAgCGucAUCACGUuuGUGgUCaGCGCCg -3'
miRNA:   3'- -GUUgGC--UAGUGCAggCGCaAG-CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.