miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11669 3' -54.9 NC_003102.1 + 1285 0.66 0.949992
Target:  5'- aAGCCGAgacgaUCGCGUCgaGCGUgauaGCCg -3'
miRNA:   3'- gUUGGCU-----AGUGCAGg-CGCAagcgCGG- -5'
11669 3' -54.9 NC_003102.1 + 4262 0.68 0.883174
Target:  5'- gGACCGuugcUCGgGUUCGgGUUCGgGCUc -3'
miRNA:   3'- gUUGGCu---AGUgCAGGCgCAAGCgCGG- -5'
11669 3' -54.9 NC_003102.1 + 6659 0.69 0.837607
Target:  5'- -uGCUGGUgACGUUgGCGUUgGCGUUg -3'
miRNA:   3'- guUGGCUAgUGCAGgCGCAAgCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 8450 0.67 0.926277
Target:  5'- aGGCCGAggUCGCGUCUucCGUUucuucuaaaCGCGCUa -3'
miRNA:   3'- gUUGGCU--AGUGCAGGc-GCAA---------GCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 14862 0.69 0.812227
Target:  5'- aAACCGAUCAuuaguuCGUCCGaGUcaucCGCGUCa -3'
miRNA:   3'- gUUGGCUAGU------GCAGGCgCAa---GCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 17193 0.68 0.883174
Target:  5'- gCAGCCuGAUCagcgACGUgCGCGa-CGCGCUa -3'
miRNA:   3'- -GUUGG-CUAG----UGCAgGCGCaaGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 17399 0.71 0.708442
Target:  5'- aUAGCCGGUCACGUagaagcugccgcCCGUGcuguuuagCGCGUCg -3'
miRNA:   3'- -GUUGGCUAGUGCA------------GGCGCaa------GCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 18470 0.69 0.807849
Target:  5'- gCGAUCaGGUCACGgcucugcagggcgCCGUcgacgauGUUCGCGCCa -3'
miRNA:   3'- -GUUGG-CUAGUGCa------------GGCG-------CAAGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 22992 0.67 0.900512
Target:  5'- cCGACCGAUCgguauagGCGUUcaggguauggcggaCGCGUUCGUgaugaugcguauGCCg -3'
miRNA:   3'- -GUUGGCUAG-------UGCAG--------------GCGCAAGCG------------CGG- -5'
11669 3' -54.9 NC_003102.1 + 23608 0.67 0.926277
Target:  5'- aGACCGggCGCGUuuGCcGUuuaccUCGaGCCg -3'
miRNA:   3'- gUUGGCuaGUGCAggCG-CA-----AGCgCGG- -5'
11669 3' -54.9 NC_003102.1 + 27682 0.71 0.728246
Target:  5'- uGAUCGAUCGCGUCCaacCGaUCG-GCCa -3'
miRNA:   3'- gUUGGCUAGUGCAGGc--GCaAGCgCGG- -5'
11669 3' -54.9 NC_003102.1 + 27938 0.79 0.333788
Target:  5'- gCAAUCGAUCACGUCCGgCGUgaGCGUa -3'
miRNA:   3'- -GUUGGCUAGUGCAGGC-GCAagCGCGg -5'
11669 3' -54.9 NC_003102.1 + 31046 0.66 0.949992
Target:  5'- aAACgUGAUgaACGUCCGCGUucaagauaucgaUCGUGUCc -3'
miRNA:   3'- gUUG-GCUAg-UGCAGGCGCA------------AGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 31815 0.66 0.949992
Target:  5'- gAACCgGAUCACuauucgguucuGUCCGaCGgUCGUGCa -3'
miRNA:   3'- gUUGG-CUAGUG-----------CAGGC-GCaAGCGCGg -5'
11669 3' -54.9 NC_003102.1 + 36528 0.66 0.931493
Target:  5'- gGGCCGAga--GUCUgcaguGCGUUCGCGgCg -3'
miRNA:   3'- gUUGGCUagugCAGG-----CGCAAGCGCgG- -5'
11669 3' -54.9 NC_003102.1 + 37754 0.69 0.812227
Target:  5'- -uGCCGcuuUCGuCGUCCuCG-UCGCGCCg -3'
miRNA:   3'- guUGGCu--AGU-GCAGGcGCaAGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 41039 0.68 0.861315
Target:  5'- --cCUGGUCACGUUCGacgacgcgagauCGgugCGCGCCa -3'
miRNA:   3'- guuGGCUAGUGCAGGC------------GCaa-GCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 49872 0.66 0.936471
Target:  5'- uGGCCGGUC-CGUCgGCGaggaCGC-CCg -3'
miRNA:   3'- gUUGGCUAGuGCAGgCGCaa--GCGcGG- -5'
11669 3' -54.9 NC_003102.1 + 53789 0.68 0.883174
Target:  5'- aCGGCCGAg-ACGUgaGCaacGUUCGCGCUu -3'
miRNA:   3'- -GUUGGCUagUGCAggCG---CAAGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 57907 0.66 0.949992
Target:  5'- -cGCCGAgagGCuaaUCGCGUUCGcCGCCg -3'
miRNA:   3'- guUGGCUag-UGca-GGCGCAAGC-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.