miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11669 3' -54.9 NC_003102.1 + 133728 0.66 0.945719
Target:  5'- -uGuuGAUCGgGgCCGCG-UCGCaGCCg -3'
miRNA:   3'- guUggCUAGUgCaGGCGCaAGCG-CGG- -5'
11669 3' -54.9 NC_003102.1 + 133520 0.66 0.941213
Target:  5'- aAGCCGaAUCGCugaUCCGCGU---CGCCg -3'
miRNA:   3'- gUUGGC-UAGUGc--AGGCGCAagcGCGG- -5'
11669 3' -54.9 NC_003102.1 + 129278 0.66 0.935984
Target:  5'- gCAGUCGAUCAaauugcaacauuUGUgauuaucuccugaCCGCGUUCGuCGCCg -3'
miRNA:   3'- -GUUGGCUAGU------------GCA-------------GGCGCAAGC-GCGG- -5'
11669 3' -54.9 NC_003102.1 + 128763 0.69 0.844903
Target:  5'- aUAGCCGGUCucgagacGCGUCUGUcuagCGCGCUc -3'
miRNA:   3'- -GUUGGCUAG-------UGCAGGCGcaa-GCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 121240 0.67 0.902414
Target:  5'- gCGACCGAUCagaugcagauGCGaUCCGgGcuuuguguccgauUUCGUGCCc -3'
miRNA:   3'- -GUUGGCUAG----------UGC-AGGCgC-------------AAGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 121124 0.73 0.617146
Target:  5'- -uGCCGGUCGCG-CCGUG-UC-CGCCg -3'
miRNA:   3'- guUGGCUAGUGCaGGCGCaAGcGCGG- -5'
11669 3' -54.9 NC_003102.1 + 121010 0.67 0.909205
Target:  5'- uCGAuCCGAUCACGg--GCGa--GCGCCa -3'
miRNA:   3'- -GUU-GGCUAGUGCaggCGCaagCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 117421 0.67 0.915132
Target:  5'- gAAuaGGUCACGUUgGCGgcucUUGUGCCu -3'
miRNA:   3'- gUUggCUAGUGCAGgCGCa---AGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 112233 0.66 0.931493
Target:  5'- uGACCGAUCuCGUCUacacCGUUCGauCCg -3'
miRNA:   3'- gUUGGCUAGuGCAGGc---GCAAGCgcGG- -5'
11669 3' -54.9 NC_003102.1 + 109030 0.68 0.876103
Target:  5'- gAGCCGAUCACGUuuGag--C-CGCCu -3'
miRNA:   3'- gUUGGCUAGUGCAggCgcaaGcGCGG- -5'
11669 3' -54.9 NC_003102.1 + 102262 0.67 0.896648
Target:  5'- uCGAgCGucAUCACGUuuGUGgUCaGCGCCg -3'
miRNA:   3'- -GUUgGC--UAGUGCAggCGCaAG-CGCGG- -5'
11669 3' -54.9 NC_003102.1 + 98587 0.66 0.935003
Target:  5'- uGAUCGAUCACGUaauucucuuucaUCGUGUuaucgauuccguugUUGCGCUg -3'
miRNA:   3'- gUUGGCUAGUGCA------------GGCGCA--------------AGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 95735 0.71 0.718381
Target:  5'- gGGCCGAagACGgCCGCa-UCGUGCCg -3'
miRNA:   3'- gUUGGCUagUGCaGGCGcaAGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 95239 0.66 0.936471
Target:  5'- uCGGCCGAaCACaUCaacaaggGCGUagGCGCCg -3'
miRNA:   3'- -GUUGGCUaGUGcAGg------CGCAagCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 85907 0.67 0.915132
Target:  5'- aAACaGggCGUGcCCGaCGUUCGCGCCa -3'
miRNA:   3'- gUUGgCuaGUGCaGGC-GCAAGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 79574 0.69 0.852828
Target:  5'- gGACCcguaAUCGCGUCCGaaagauaCGUUCGCGaCg -3'
miRNA:   3'- gUUGGc---UAGUGCAGGC-------GCAAGCGCgG- -5'
11669 3' -54.9 NC_003102.1 + 77825 0.66 0.931493
Target:  5'- -uGCUGGUCACGUUuucgaCGCG-UCGCuCCu -3'
miRNA:   3'- guUGGCUAGUGCAG-----GCGCaAGCGcGG- -5'
11669 3' -54.9 NC_003102.1 + 72147 0.71 0.708442
Target:  5'- ---gCGAUCGCGUCCGCGaUCauguacugaaGCGCg -3'
miRNA:   3'- guugGCUAGUGCAGGCGCaAG----------CGCGg -5'
11669 3' -54.9 NC_003102.1 + 71349 0.67 0.905536
Target:  5'- aCAGCaccaCGAUCACGcCCGUcaucauguugaacauGUUCGCGUUu -3'
miRNA:   3'- -GUUG----GCUAGUGCaGGCG---------------CAAGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 63685 1.12 0.002597
Target:  5'- aCAACCGAUCACGUCCGCGUUCGCGCCu -3'
miRNA:   3'- -GUUGGCUAGUGCAGGCGCAAGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.