miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11669 5' -56.1 NC_003102.1 + 41282 0.66 0.875909
Target:  5'- uGCuGCGucuCGgaACCGUAgucGACGACGCGAa -3'
miRNA:   3'- -UGuCGUu--GC--UGGCGU---CUGCUGCGCUa -5'
11669 5' -56.1 NC_003102.1 + 17202 0.68 0.793079
Target:  5'- uCAGCGACGugCGC-GACG-CGCu-- -3'
miRNA:   3'- uGUCGUUGCugGCGuCUGCuGCGcua -5'
11669 5' -56.1 NC_003102.1 + 66764 0.67 0.811096
Target:  5'- uGCGGCGGCGACgac-GACGACGaCGAUu -3'
miRNA:   3'- -UGUCGUUGCUGgcguCUGCUGC-GCUA- -5'
11669 5' -56.1 NC_003102.1 + 45862 0.67 0.819861
Target:  5'- gGCAGCGGCGGCgGCGGcuACGGuCGaUGAUu -3'
miRNA:   3'- -UGUCGUUGCUGgCGUC--UGCU-GC-GCUA- -5'
11669 5' -56.1 NC_003102.1 + 75699 0.67 0.819861
Target:  5'- uCGGCGGCG-CCGUcaccGACGACGaCGAc -3'
miRNA:   3'- uGUCGUUGCuGGCGu---CUGCUGC-GCUa -5'
11669 5' -56.1 NC_003102.1 + 119694 0.67 0.836859
Target:  5'- aACAGCAGCGcaacaaCGacuaAGACGACGaCGAc -3'
miRNA:   3'- -UGUCGUUGCug----GCg---UCUGCUGC-GCUa -5'
11669 5' -56.1 NC_003102.1 + 80565 0.67 0.845077
Target:  5'- gGCAGCAACGAUCGgaacaugaaCAGA-GGCGCa-- -3'
miRNA:   3'- -UGUCGUUGCUGGC---------GUCUgCUGCGcua -5'
11669 5' -56.1 NC_003102.1 + 31498 0.67 0.852305
Target:  5'- gACGGUAAuuuuuggUGGCCGCuuGACGgagACGCGAUa -3'
miRNA:   3'- -UGUCGUU-------GCUGGCGu-CUGC---UGCGCUA- -5'
11669 5' -56.1 NC_003102.1 + 15240 0.66 0.866261
Target:  5'- cCAGCGACGuugacaacgauccuGCCGCGuACGAguUGCGAUa -3'
miRNA:   3'- uGUCGUUGC--------------UGGCGUcUGCU--GCGCUA- -5'
11669 5' -56.1 NC_003102.1 + 59794 0.68 0.764964
Target:  5'- -gGGCAGCGACgGCGGAaauuaAUGCGAUu -3'
miRNA:   3'- ugUCGUUGCUGgCGUCUgc---UGCGCUA- -5'
11669 5' -56.1 NC_003102.1 + 87675 0.69 0.735766
Target:  5'- cCGGCGACGaaGCCGUcucguucauuAGACGAUGCGu- -3'
miRNA:   3'- uGUCGUUGC--UGGCG----------UCUGCUGCGCua -5'
11669 5' -56.1 NC_003102.1 + 39807 0.69 0.735766
Target:  5'- aACAgauGCGGCGACCGCuGGgcuCGGCuGCGAUg -3'
miRNA:   3'- -UGU---CGUUGCUGGCGuCU---GCUG-CGCUA- -5'
11669 5' -56.1 NC_003102.1 + 60200 0.75 0.375259
Target:  5'- gGCAGCGGCGGCgGCGGcgGCGAUGCa-- -3'
miRNA:   3'- -UGUCGUUGCUGgCGUC--UGCUGCGcua -5'
11669 5' -56.1 NC_003102.1 + 92419 0.74 0.46372
Target:  5'- cACAGCGGCGAgCGCuuGGCGAuaUGCGAa -3'
miRNA:   3'- -UGUCGUUGCUgGCGu-CUGCU--GCGCUa -5'
11669 5' -56.1 NC_003102.1 + 114985 0.73 0.482699
Target:  5'- aACGGCGGCGACagCGguGGCgGugGCGGUg -3'
miRNA:   3'- -UGUCGUUGCUG--GCguCUG-CugCGCUA- -5'
11669 5' -56.1 NC_003102.1 + 32419 0.72 0.561911
Target:  5'- gGCGGCAACGGuuGagaAGAaGACGCGAc -3'
miRNA:   3'- -UGUCGUUGCUggCg--UCUgCUGCGCUa -5'
11669 5' -56.1 NC_003102.1 + 63909 0.72 0.582328
Target:  5'- cGCAGaCAACGguuGCCGCaaAGGCGAUGUGGUu -3'
miRNA:   3'- -UGUC-GUUGC---UGGCG--UCUGCUGCGCUA- -5'
11669 5' -56.1 NC_003102.1 + 134371 0.71 0.61321
Target:  5'- gUAGCGGCGGCgGCGG-CGGCgGCGGUc -3'
miRNA:   3'- uGUCGUUGCUGgCGUCuGCUG-CGCUA- -5'
11669 5' -56.1 NC_003102.1 + 33105 0.71 0.632848
Target:  5'- gGCGGCGGCGACUGCAcGGCguuguuugucucuGACGgGAa -3'
miRNA:   3'- -UGUCGUUGCUGGCGU-CUG-------------CUGCgCUa -5'
11669 5' -56.1 NC_003102.1 + 135091 0.7 0.675142
Target:  5'- -gGGCGACGACgGCGGuggcugguuCGACGCGu- -3'
miRNA:   3'- ugUCGUUGCUGgCGUCu--------GCUGCGCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.