Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11669 | 5' | -56.1 | NC_003102.1 | + | 14325 | 0.67 | 0.853098 |
Target: 5'- uGCAGCAACcGCCGCcacgAGACu-CGUGAg -3' miRNA: 3'- -UGUCGUUGcUGGCG----UCUGcuGCGCUa -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 15240 | 0.66 | 0.866261 |
Target: 5'- cCAGCGACGuugacaacgauccuGCCGCGuACGAguUGCGAUa -3' miRNA: 3'- uGUCGUUGC--------------UGGCGUcUGCU--GCGCUA- -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 17202 | 0.68 | 0.793079 |
Target: 5'- uCAGCGACGugCGC-GACG-CGCu-- -3' miRNA: 3'- uGUCGUUGCugGCGuCUGCuGCGcua -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 17732 | 0.77 | 0.320499 |
Target: 5'- gGCGGCGGCGGCgGCGGcgGCGGCgGCGGUg -3' miRNA: 3'- -UGUCGUUGCUGgCGUC--UGCUG-CGCUA- -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 21498 | 0.67 | 0.845077 |
Target: 5'- cGCGGacACG-CCGCAGGCGuACGCGc- -3' miRNA: 3'- -UGUCguUGCuGGCGUCUGC-UGCGCua -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 23705 | 0.71 | 0.633882 |
Target: 5'- gAguGUGGCGGgCGUAGGCGGCGCGu- -3' miRNA: 3'- -UguCGUUGCUgGCGUCUGCUGCGCua -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 31498 | 0.67 | 0.852305 |
Target: 5'- gACGGUAAuuuuuggUGGCCGCuuGACGgagACGCGAUa -3' miRNA: 3'- -UGUCGUU-------GCUGGCGu-CUGC---UGCGCUA- -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 32419 | 0.72 | 0.561911 |
Target: 5'- gGCGGCAACGGuuGagaAGAaGACGCGAc -3' miRNA: 3'- -UGUCGUUGCUggCg--UCUgCUGCGCUa -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 33105 | 0.71 | 0.632848 |
Target: 5'- gGCGGCGGCGACUGCAcGGCguuguuugucucuGACGgGAa -3' miRNA: 3'- -UGUCGUUGCUGGCGU-CUG-------------CUGCgCUa -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 37871 | 0.71 | 0.602891 |
Target: 5'- gGCGGCGGCGGCgGCGguGAUGAUGaCGAa -3' miRNA: 3'- -UGUCGUUGCUGgCGU--CUGCUGC-GCUa -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 38908 | 0.67 | 0.819861 |
Target: 5'- gGCGGCGACGACgacgacgaUGaCGG-UGACGCGAUc -3' miRNA: 3'- -UGUCGUUGCUG--------GC-GUCuGCUGCGCUA- -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 39807 | 0.69 | 0.735766 |
Target: 5'- aACAgauGCGGCGACCGCuGGgcuCGGCuGCGAUg -3' miRNA: 3'- -UGU---CGUUGCUGGCGuCU---GCUG-CGCUA- -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 41282 | 0.66 | 0.875909 |
Target: 5'- uGCuGCGucuCGgaACCGUAgucGACGACGCGAa -3' miRNA: 3'- -UGuCGUu--GC--UGGCGU---CUGCUGCGCUa -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 41934 | 0.66 | 0.890015 |
Target: 5'- uGCGGCGaccacGCGAuCCGUGGuCGAUGCGu- -3' miRNA: 3'- -UGUCGU-----UGCU-GGCGUCuGCUGCGCua -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 45862 | 0.67 | 0.819861 |
Target: 5'- gGCAGCGGCGGCgGCGGcuACGGuCGaUGAUu -3' miRNA: 3'- -UGUCGUUGCUGgCGUC--UGCU-GC-GCUA- -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 48954 | 0.66 | 0.860142 |
Target: 5'- cCAGCGACGAgaGCAGuaGCGACGgcuauucCGAUg -3' miRNA: 3'- uGUCGUUGCUggCGUC--UGCUGC-------GCUA- -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 49006 | 0.68 | 0.793079 |
Target: 5'- --cGCGGCGGCgGC-GACGGCgGCGAa -3' miRNA: 3'- uguCGUUGCUGgCGuCUGCUG-CGCUa -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 59794 | 0.68 | 0.764964 |
Target: 5'- -gGGCAGCGACgGCGGAaauuaAUGCGAUu -3' miRNA: 3'- ugUCGUUGCUGgCGUCUgc---UGCGCUA- -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 60200 | 0.75 | 0.375259 |
Target: 5'- gGCAGCGGCGGCgGCGGcgGCGAUGCa-- -3' miRNA: 3'- -UGUCGUUGCUGgCGUC--UGCUGCGcua -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 62028 | 0.71 | 0.638018 |
Target: 5'- uACGGCGACGACgGCAucauccgaugaaaccGACGAuccuuaCGCGAUc -3' miRNA: 3'- -UGUCGUUGCUGgCGU---------------CUGCU------GCGCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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