miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11669 5' -56.1 NC_003102.1 + 136689 0.7 0.64422
Target:  5'- uGCAGCuggUGACCGUuGACGAUGCGc- -3'
miRNA:   3'- -UGUCGuu-GCUGGCGuCUGCUGCGCua -5'
11669 5' -56.1 NC_003102.1 + 135091 0.7 0.675142
Target:  5'- -gGGCGACGACgGCGGuggcugguuCGACGCGu- -3'
miRNA:   3'- ugUCGUUGCUGgCGUCu--------GCUGCGCua -5'
11669 5' -56.1 NC_003102.1 + 134371 0.71 0.61321
Target:  5'- gUAGCGGCGGCgGCGG-CGGCgGCGGUc -3'
miRNA:   3'- uGUCGUUGCUGgCGUCuGCUG-CGCUA- -5'
11669 5' -56.1 NC_003102.1 + 133908 0.7 0.675142
Target:  5'- uGCGGCGACacuACgGCGGcuGCGACGCGGc -3'
miRNA:   3'- -UGUCGUUGc--UGgCGUC--UGCUGCGCUa -5'
11669 5' -56.1 NC_003102.1 + 129106 0.7 0.664859
Target:  5'- -gGGUAGCGGCgGCGGcCGACGCa-- -3'
miRNA:   3'- ugUCGUUGCUGgCGUCuGCUGCGcua -5'
11669 5' -56.1 NC_003102.1 + 119694 0.67 0.836859
Target:  5'- aACAGCAGCGcaacaaCGacuaAGACGACGaCGAc -3'
miRNA:   3'- -UGUCGUUGCug----GCg---UCUGCUGC-GCUa -5'
11669 5' -56.1 NC_003102.1 + 114985 0.73 0.482699
Target:  5'- aACGGCGGCGACagCGguGGCgGugGCGGUg -3'
miRNA:   3'- -UGUCGUUGCUG--GCguCUG-CugCGCUA- -5'
11669 5' -56.1 NC_003102.1 + 105499 0.75 0.392025
Target:  5'- aACAGCGGCGACgaCGguGACGACGaaaaaGAUg -3'
miRNA:   3'- -UGUCGUUGCUG--GCguCUGCUGCg----CUA- -5'
11669 5' -56.1 NC_003102.1 + 102035 0.66 0.890015
Target:  5'- aGCGGCGGCGGUgGCGGugG-CgGCGGUg -3'
miRNA:   3'- -UGUCGUUGCUGgCGUCugCuG-CGCUA- -5'
11669 5' -56.1 NC_003102.1 + 92419 0.74 0.46372
Target:  5'- cACAGCGGCGAgCGCuuGGCGAuaUGCGAa -3'
miRNA:   3'- -UGUCGUUGCUgGCGu-CUGCU--GCGCUa -5'
11669 5' -56.1 NC_003102.1 + 87675 0.69 0.735766
Target:  5'- cCGGCGACGaaGCCGUcucguucauuAGACGAUGCGu- -3'
miRNA:   3'- uGUCGUUGC--UGGCG----------UCUGCUGCGCua -5'
11669 5' -56.1 NC_003102.1 + 81545 0.7 0.664859
Target:  5'- cGCGGUcGCcgUCGCAGACGACGCGu- -3'
miRNA:   3'- -UGUCGuUGcuGGCGUCUGCUGCGCua -5'
11669 5' -56.1 NC_003102.1 + 80565 0.67 0.845077
Target:  5'- gGCAGCAACGAUCGgaacaugaaCAGA-GGCGCa-- -3'
miRNA:   3'- -UGUCGUUGCUGGC---------GUCUgCUGCGcua -5'
11669 5' -56.1 NC_003102.1 + 75699 0.67 0.819861
Target:  5'- uCGGCGGCG-CCGUcaccGACGACGaCGAc -3'
miRNA:   3'- uGUCGUUGCuGGCGu---CUGCUGC-GCUa -5'
11669 5' -56.1 NC_003102.1 + 73512 0.66 0.883075
Target:  5'- -aGGCAcgauuACGACCGaCGacGACGACGaCGAg -3'
miRNA:   3'- ugUCGU-----UGCUGGC-GU--CUGCUGC-GCUa -5'
11669 5' -56.1 NC_003102.1 + 70723 0.66 0.86852
Target:  5'- cCAGC--UGACCGUcGACGACGUGu- -3'
miRNA:   3'- uGUCGuuGCUGGCGuCUGCUGCGCua -5'
11669 5' -56.1 NC_003102.1 + 69552 0.68 0.802166
Target:  5'- aACAGCGACGAa-GUAaACGACGUGGc -3'
miRNA:   3'- -UGUCGUUGCUggCGUcUGCUGCGCUa -5'
11669 5' -56.1 NC_003102.1 + 66764 0.67 0.811096
Target:  5'- uGCGGCGGCGACgac-GACGACGaCGAUu -3'
miRNA:   3'- -UGUCGUUGCUGgcguCUGCUGC-GCUA- -5'
11669 5' -56.1 NC_003102.1 + 63909 0.72 0.582328
Target:  5'- cGCAGaCAACGguuGCCGCaaAGGCGAUGUGGUu -3'
miRNA:   3'- -UGUC-GUUGC---UGGCG--UCUGCUGCGCUA- -5'
11669 5' -56.1 NC_003102.1 + 63650 1.05 0.004672
Target:  5'- aACAGCAACGACCGCAGACGACGCGAUc -3'
miRNA:   3'- -UGUCGUUGCUGGCGUCUGCUGCGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.