Results 1 - 9 of 9 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 1167 | 3' | -48.2 | NC_001132.2 | + | 58113 | 0.67 | 0.999383 |
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Target: 5'- ---cUACGUCGUcuagGGACGCGGu- -3' miRNA: 3'- agaaAUGCAGCAuugaCCUGUGCCug -5' |
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| 1167 | 3' | -48.2 | NC_001132.2 | + | 154444 | 0.67 | 0.999064 |
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Target: 5'- ----cACGUCGUcuccgaUGGcCGCGGACa -3' miRNA: 3'- agaaaUGCAGCAuug---ACCuGUGCCUG- -5' |
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| 1167 | 3' | -48.2 | NC_001132.2 | + | 136270 | 0.67 | 0.998857 |
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Target: 5'- gUCggUGCGUUgGUAAgUaGGACACGGuCg -3' miRNA: 3'- -AGaaAUGCAG-CAUUgA-CCUGUGCCuG- -5' |
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| 1167 | 3' | -48.2 | NC_001132.2 | + | 160615 | 0.68 | 0.996619 |
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Target: 5'- ----aGCGUC---GCUGGACAguCGGACg -3' miRNA: 3'- agaaaUGCAGcauUGACCUGU--GCCUG- -5' |
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| 1167 | 3' | -48.2 | NC_001132.2 | + | 7656 | 0.69 | 0.993685 |
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Target: 5'- ----gGCGUuuaCGaAAUUGGAUACGGACg -3' miRNA: 3'- agaaaUGCA---GCaUUGACCUGUGCCUG- -5' |
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| 1167 | 3' | -48.2 | NC_001132.2 | + | 69664 | 0.7 | 0.990359 |
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Target: 5'- ----gGCGUUGaAGCcGGACACGGAg -3' miRNA: 3'- agaaaUGCAGCaUUGaCCUGUGCCUg -5' |
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| 1167 | 3' | -48.2 | NC_001132.2 | + | 141772 | 0.71 | 0.977085 |
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Target: 5'- ----cACGUCGUuuguAACUGGACACcuccauuaaaaauGGACu -3' miRNA: 3'- agaaaUGCAGCA----UUGACCUGUG-------------CCUG- -5' |
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| 1167 | 3' | -48.2 | NC_001132.2 | + | 30566 | 0.71 | 0.974738 |
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Target: 5'- aCUUUGCGgag-GACuUGGACACGcGACa -3' miRNA: 3'- aGAAAUGCagcaUUG-ACCUGUGC-CUG- -5' |
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| 1167 | 3' | -48.2 | NC_001132.2 | + | 136370 | 1.12 | 0.011898 |
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Target: 5'- gUCUUUACGUCGUAACUGGACACGGACg -3' miRNA: 3'- -AGAAAUGCAGCAUUGACCUGUGCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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